EY656634

Overview
NameEY656634
Unique NameEY656634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.400e-15
Identity = 60/226 (26.55%), Postives = 107/226 (47.35%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKT-KAEKQYVIA 710
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y   A++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 3.120e-15
Identity = 60/226 (26.55%), Postives = 106/226 (46.90%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKT-KAEKQYVIA 710
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y   A++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 60/226 (26.55%), Postives = 106/226 (46.90%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKT-KAEKQYVIA 710
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y   A++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 5.322e-15
Identity = 60/226 (26.55%), Postives = 106/226 (46.90%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKT-KAEKQYVIA 710
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+++   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y   A++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 60/226 (26.55%), Postives = 105/226 (46.46%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKT-KAEKQYVIA 710
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y   A++ + F  T  ++K+  IA
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 61/224 (27.23%), Postives = 106/224 (47.32%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKTKAEKQYV 704
            +E+ VKA      I G+CPF QR  + L  K V +    ++++ KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y   A+A E F  T  E + +
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEI 235          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.186e-14
Identity = 65/235 (27.66%), Postives = 107/235 (45.53%), Query Frame = 3
Query:   69 SLRSLNSAKMAVEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKTKAEKQYV 704
            SL     A   +E+ VKA      I G+CPF QR  + L  K V +    I+ + KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y   A+A E F  T  E + +
Sbjct:    3 SLALNTQADPEIELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFAHTCPEDKEI 235          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.641e-14
Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKTKA 689
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K A+A + F  T A
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.641e-14
Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 3
Query:  102 VEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKTKA 689
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K A+A + F  T A
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
BLAST of EY656634 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 62/240 (25.83%), Postives = 104/240 (43.33%), Query Frame = 3
Query:   90 AKMAVEICVKAVVPAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKAFALESFQKTKAEKQYVIAGWVPKVN 731
            A+  +++ VKA      + G CP  QR  + L  K VP+    ++    P    + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y   A   + F+ T      ++A + P V+
Sbjct:    2 AETKLQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVH 234          
The following BLAST results are available for this feature:
BLAST of EY656634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC4_RAT1.400e-1526.55Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB3.120e-1526.55Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE5.322e-1526.55Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN5.322e-1526.55Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC4_HUMAN6.951e-1526.55Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_HUMAN6.951e-1527.23Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC2_RAT1.186e-1427.66Chloride intracellular channel protein 2 OS=Rattus... [more]
CLIC5_RAT2.641e-1426.94Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE2.641e-1426.94Chloride intracellular channel protein 5 OS=Mus mu... [more]
CLIC3_HUMAN5.884e-1425.83Chloride intracellular channel protein 3 OS=Homo s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-123-A03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY656634 ID=EY656634; Name=EY656634; organism=Citrus sinensis; type=EST; length=941bp
CATTTGTACCCTTTTTAACTGTTCCGGAATTCTCTGTCCGACCCACGCGT
CCGAACAGCAACATATTTTCTCTCAGATCACTCAATTCCGCAAAAATGGC
CGTGGAGATTTGTGTGAAAGCCGTTGTTCCCGCTCCTGATATTCTCGGGG
ACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTT
CCATACAAGCGTCACCTCATCAATATCAGTGACAAGCCTCAATGGTTTTT
GGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAAGTTTGATGACAAGT
GGGTGGCTGACTCTGATGTGATTGTTAGAATTATTGAGGAGAAGTATCCT
GAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCTGTTGGATCAAAGAT
ATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGACCCAAATGATGGGA
CAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGGATGAGCATCTTAAG
ACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGTCACTGCTGTAGATTT
GAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGCTCTTGAACATTTCA
AGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCCATGGGTACACGAAG
AAAGCTTTTGCTCTGGAATCCTTTCAGAAGACTAAGGCTGAAAAGCAATA
CGTGATTGCAGGATGGGTGCCGAAGGTCAATGCATGAACTAGTTCTAAGC
TATGCGGTGTTTGAAATCTAGCTAATGGAATGCGGAGTATGTATGTGTGA
GACTGGGAGCATAATAGAATGGTCACTGGGGGGTTGTATCATCCCATAAG
GTGGCTACGATGATATTGCTATTTGTATAATGAAACCTCTGGNTGAATGG
ATTTACTCTAAGTCTGGAATCTCCTACGGGATTAATGGTTA
back to top