EY675132

Overview
NameEY675132
Unique NameEY675132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_CHLT3 (Serine hydroxymethyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.068e-43
Identity = 110/252 (43.65%), Postives = 140/252 (55.56%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTG-PQIPQP------PTPKKLGGGPRGG 832
            L+  DPE++  I+ E  RQ   +ELIASENFTS AV+EA GS +TNKY+EG PG R+YGG EF+D  E+L R RA + F  +      NVQP+SGS AN A      +P D I+G DL  GGHLTH      G  ++ +     +  Y V   TG ID N++EEKA + + KLIICG SA  R+WEYA+F+          A  +    MA +A P     L+ TG    P P       T  K   GPRGG
Sbjct:    6 LKNADPEVYAAIQSELERQTDTLELIASENFTSRAVMEACGSVMTNKYAEGYPGKRFYGGCEFVDVAEDLARDRAKKLFSCE----YANVQPHSGSSANMAVIFTFCKPGDTILGFDLSHGGHLTH------GSPVNFSGQFYNAHFYGVEKETGRIDMNRVEEKAKEVKPKLIICGASAYSRDWEYAEFRR--------IADSVDAILMADIAHPAG---LIATGLLNDPMPHCHVVTTTTHKTLRGPRGG 236          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.068e-43
Identity = 112/248 (45.16%), Postives = 142/248 (57.26%), Query Frame = 2
Query:   95 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            SL   DP++   I+ E  RQ  G+E+IASENF S AV+EA GS  TNKY+EG PG RYYGG EF D +ENL R RA Q F  +      NVQP+SGS AN AAY ++++P D I+GLDL  GGHLTHG+      K++ +  L     Y V   T  IDY++LE  A+  + K+II GGSA PR +++A+ +  A+K G        L  MA  AG   G   P       I    T K L  GPR G
Sbjct:    8 SLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGH------KLNFSGKLYRVASYGVRKDTETIDYDELEAIAVREQPKMIIGGGSAYPRIFDFARMRQIADKVG-----AFLLVDMAHFAGLVAGGAHPSPVPHAHIVTTTTHKTL-RGPRSG 239          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.007e-43
Identity = 101/216 (46.76%), Postives = 135/216 (62.50%), Query Frame = 2
Query:   95 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG 742
            +L  VDPEI+  I+ E  RQ   +ELIASENFTS AV+EA GS  TNKY+EG PG RYYGG E+ D +ENL R RA + F  +     VNVQP+SGS AN AAY AV+ P D +MGL+L  GGHLTHG+       ++ +    + +PY V      IDY+++E+ A + + K+II G SA PR  ++A+F+  A+  G  F     L  MA ++G
Sbjct:   10 TLAEVDPEIYQAIQHETARQDGQLELIASENFTSEAVLEATGSVFTNKYAEGYPGKRYYGGCEYTDVVENLARERASKLFGAE----YVNVQPHSGSQANQAAYGAVVSPGDTVMGLNLAHGGHLTHGH------ALNFSGKTYKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPRIIDFARFRKIADAVGAVF-----LVDMAHISG 210          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.007e-43
Identity = 102/245 (41.63%), Postives = 143/245 (58.37%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            D  I D+IEKE +RQ +GIELIASENF S  V++A+GS LTNKY+EG PG RYYGG E +D+ E +   R  + F+    +W  NVQP+SG+ AN A + AVL P D  +GL+L  GGHL+H      G  ++++ +L  +  Y V   TG +DY+++EE AL  + KLI+ GGSA  R+W+Y + +  A+K G       A   GL +   +  P     ++ +        T  K   GPRGG
Sbjct:    4 DNIIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSETIAIERLKKLFN---AEW-ANVQPHSGAQANAAVFFAVLNPGDTFLGLNLSHGGHLSH------GSPVNSSGVLYHATEYNVKEDTGRVDYDQMEEVALREKPKLIVGGGSAYSRDWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLNNPLEYAHIVTS--------TTHKTLRGPRGG 230          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_ANASP (Serine hydroxymethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.007e-43
Identity = 112/253 (44.27%), Postives = 146/253 (57.71%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            L   DP I  LI +E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFID+IE +   RA Q F  D      NVQP+SG+ ANFA +  +L+P D+IMG+DL  GGHLTH      G  ++ +    +   Y V+  T  +DY+++ E AL  R KL+ICG SA PR  ++ KF++ A++ G        L  +A +AG      L+ TG   P P         T  K   GPRGG
Sbjct:    9 LTNSDPAIAGLINQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDKIEQIAIDRAKQLFGAD----HANVQPHSGAQANFAVFLTLLKPGDKIMGMDLSHGGHLTH------GSPVNVSGKWFQVCHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYL-----LADIAHIAG------LVATGLH-PNPLPYCDVVTTTTHKTLRGPRGG 239          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.233e-43
Identity = 107/247 (43.32%), Postives = 141/247 (57.09%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            +   DPEI D IEKE  RQ   IELIASENF S AV+EA+GS LTNKY+EG P  RYYGG E++D  E L R R  + F  +      NVQP+SG+ AN AAY A+++P D ++G+DL  GGHLTH      G K++ +  +   + Y V   TGYIDY+++E  A   + KLI+ G SA PR  ++ +F+  A+K G        +  MA +AG       P       +    T K L  GPRGG
Sbjct:    6 IRKTDPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTH------GSKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYL-----MVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTL-RGPRGG 236          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.233e-43
Identity = 107/247 (43.32%), Postives = 141/247 (57.09%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            +   DPEI D IEKE  RQ   IELIASENF S AV+EA+GS LTNKY+EG P  RYYGG E++D  E L R R  + F  +      NVQP+SG+ AN AAY A+++P D ++G+DL  GGHLTH      G K++ +  +   + Y V   TGYIDY+++E  A   + KLI+ G SA PR  ++ +F+  A+K G        +  MA +AG       P       +    T K L  GPRGG
Sbjct:    6 IRKTDPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTH------GSKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYL-----MVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTL-RGPRGG 236          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_SORC5 (Serine hydroxymethyltransferase OS=Sorangium cellulosum (strain So ce56) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.233e-43
Identity = 99/209 (47.37%), Postives = 128/209 (61.24%), Query Frame = 2
Query:   86 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGI 712
            G  +L  VDPEI +LI  E+RR+   + LIASEN+ S AV+EA GS LTNKYSEG P  RYY G + +D +E L R+R  + F  D     VNVQPYSGSPAN A Y A  + +D IMGL LP+GGHLTHG+       +S T    +S+PY V  S   ID +++ + A   R KLI CG +A PR  ++A F+  A++ G   A  I
Sbjct:    9 GLRALNEVDPEIAELIRLEERREADTLRLIASENYVSRAVLEATGSVLTNKYSEGYPHKRYYEGQQQVDVVEELARTRVAKLFGAD----HVNVQPYSGSPANLAVYLAFAQANDTIMGLGLPAGGHLTHGW------SVSITGKYFKSVPYGVRESDHRIDLDQVRDLARAHRPKLIWCGTTAYPRTLDFAAFRAIADEVGAILAADI 207          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 5.233e-43
Identity = 114/256 (44.53%), Postives = 143/256 (55.86%), Query Frame = 2
Query:   92 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE-PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGG 832
            S L T DPEI +LIE E+ RQ  G+ELIASEN  S AV+EA+GS LTNKY+EG PG RYYGG EF D IENL R R  Q F+ +      NVQP+SG+ AN A Y +V+E   DR+M + L  GGHL+H      G  +S +  + E   Y V+  T  IDY  +EE A   + K+I+CG SA PRE ++  FQ  A+  G        +  +A +AG      L  TG   P P         T  K   GPRGG
Sbjct:    2 SYLATADPEIAELIECERLRQVNGLELIASENLVSKAVLEAMGSILTNKYAEGYPGKRYYGGCEFHDRIENLARDRLKQLFNAE----HANVQPHSGTQANMAVYFSVMECGKDRMMSMSLTQGGHLSH------GSPVSFSGKMYEVSQYGVDLKTELIDYGAVEEMAKKVKPKVIVCGASAYPREIDFKAFQEIADSVG-----AYCMADIAHIAG------LCATGVH-PSPVNVVNFTTSTTHKTLRGPRGG 235          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYA_PORGI (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis GN=glyA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.835e-43
Identity = 102/245 (41.63%), Postives = 141/245 (57.55%), Query Frame = 2
Query:  110 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGG 832
            D  I DLIEKE +RQ +GIELIASENF S  V++A+GS +TNKY+EG PG RYYGG E +D+ E +   R  Q +     +W  NVQP+SG+ AN A   A LE  D  MGL+L  GGHL+H      G  ++++ IL   + Y ++  TG +DY+ +E+ A++ + KLII GGSA  REW+Y + +  A+K G       A   GL +   +  P     ++ +        T  K   GPRGG
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLY---GAEW-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSH------GSLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLENPVKYAHIVTS--------TTHKTLRGPRGG 230          
The following BLAST results are available for this feature:
BLAST of EY675132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLT33.068e-4343.65Serine hydroxymethyltransferase OS=Chloroherpeton ... [more]
GLYA_ACIC53.068e-4345.16Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA_SOLUE4.007e-4346.76Serine hydroxymethyltransferase OS=Solibacter usit... [more]
GLYA_PARD84.007e-4341.63Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_ANASP4.007e-4344.27Serine hydroxymethyltransferase OS=Anabaena sp. (s... [more]
GLYA_THEPX5.233e-4343.32Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP35.233e-4343.32Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_SORC55.233e-4347.37Serine hydroxymethyltransferase OS=Sorangium cellu... [more]
GLYA_METPE5.233e-4344.53Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_PORGI6.835e-4341.63Serine hydroxymethyltransferase OS=Porphyromonas g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675132 ID=EY675132; Name=EY675132; organism=Citrus sinensis; type=EST; length=1026bp
CACGCGTCCGCATTTTCCCTTTTTTTCCTTTTCAGTGAATCCAGAAAACG
GAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCTT
GAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCCG
ACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCG
CCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGGA
ATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCGA
GAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACCC
AGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGCC
GCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACTT
GCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAA
AGATATCGGCGACTTCGATTTTACTCGAGAGCTTGCCGTACAAGGTGAAT
TCGAGTACTGGGTATATTGATTACAATAAGTTGGAGGAGAAAGCGTTGGA
TTTTAGGGCGAAGTTGATCATTTGCGGGGGGAGTGCGTAACCAAGGGAAT
GGGAATATGCCAAATTCCAAACTGGTGCTGAAAAGTGGGGGGGCCCTTTT
GCTCGGGGGATAGGGCTCAAATCAATGGCCTTTGTTGCTGGCCCAGGAAA
CTGCCAACCCCTTTTGAATACTGGTCCCCAAATCCCCCAACCCCCAACCC
CAAAAAAACTTGGGGGGGGCCCCAGGGGGGGGGATAGATTTCTTCCACCG
GGAAAGGGGCCCCTAAACACCCCCCAAAAAAAGGGGCCCAACCCAAAGGG
GGGGGGCGGGTTTTTATACTTTTTAAAAAAAAAAAAAAAATAAATTTTTT
TTTGGTTGTTTCCTCCCCCCCCCCCCCCCCTCTTCAGGAGGGGGGGGGTG
CCTCCTCCCCCACACACACCCCCCAC
back to top