EY675125

Overview
NameEY675125
Unique NameEY675125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1049
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.440e-11
Identity = 51/187 (27.27%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +   +   D   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288
[Close]
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.880e-11
Identity = 51/187 (27.27%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +   +   D   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288
[Close]
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.880e-11
Identity = 51/187 (27.27%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +   +   D   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288
[Close]
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.880e-11
Identity = 51/187 (27.27%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +   +   D   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288
[Close]
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.456e-11
Identity = 50/187 (26.74%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +   +   D   K  L   +     +A+A+   D  + +  L+T   +NR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---VNRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288
[Close]
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.456e-11
Identity = 50/187 (26.74%), Postives = 88/187 (47.06%), Query Frame = 2 
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +   +   D   K  L   +     +A+A+   D  + +  L+T   +NR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---VNRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288
The following BLAST results are available for this feature:
BLAST of EY675125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GDIA_CANFA1.440e-1127.27Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_RAT1.880e-1127.27Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY1.880e-1127.27Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_MACFA1.880e-1127.27Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_PANTR2.456e-1126.74Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_HUMAN2.456e-1126.74Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-D11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675125 ID=EY675125; Name=EY675125; organism=Citrus sinensis; type=EST; length=1049bp
TGCCAAACTGTGTAGTGTGCCGGATTCACGTGCTGCGATTTTTAAGGATA
AGAGTTTGGGTTTGATGGAGAAGAATCAGTTGATGAGATTCTTTAAGCTT
GTTCAGGGACACTTGAGCCTAGATGAGAGCGAAGAAAATGATGTGAGAAT
CTCCGAGGAAGATTTGGACAGTCCTTTTGCTGATTTTTTGACTAAAATGA
AGTTGTCTCACAAGATTAAATCTATTGTTCTATATGCAATAGCGATGGCA
GATTATGATCAAGAAGTCAGTGAATATGTGCTTAAGACAAGAGATGGCAT
CAATCGATTAGCTCTCTACAACTCATCCATTGGCAGGTTTCAAAATGCAC
TTGGGGCTTTGATATATCCCATTTATGGGCAAGGGGAACTACCACAAGCC
TTTTGCCGTCGTGCTGCCGTCAAAGGCTGTCTTTATGTTCTGCGGATGCC
GGTGATTTCTCTGCTTACGGATCAGAATAGTGGGTCCTATAAAGGTGTTA
GAATTGGCTTTCAGGTCAAGGATATATTGGAGCCACAAAGTTGGGTCCCT
AAATCATTCTTTTTACTGTTCCGGGGTCTTTAACCTCATCTCATCCACCA
CTGCGAGAAAAGTTTTTCAAGCTTTTAGTCCCCAATGGATAAATAAAGGG
AAGGGGGGCGTGGGGGGGATTGCTATTACAAGGAGTTTCCTTGGAAACCC
AAATTCATATCAAAATTTTTTTGGGGAAGTTTTGCCCCCCCCAAATTTTA
GGTTTCCCCAGGGGGGGGGTGAAGTCAATCCCAGAATTACCCACGTTTGG
GGGGGAATATTTATAATGGTATGAGCATGGTCAAAAAAGTGTTGGGGGGT
GGAATTTTTTCCACCGCTTTGTATTAAACAACCGATACCATCCAGGGGGG
GAAAAAAGAATTTATCTCGAAAATGGGGCGGCGTTGAATAAGGGCGGTGC
AGGAAGAAGAAAGAAGTGGTGTGGGAAAGTGGACGGGAGGAGAGGGTATG
GGGGTGGGATGAGAGAAATGGTGCGCCGACCACAGACACGCTGGCAAGC
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