EY675117

Overview
NameEY675117
Unique NameEY675117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.643e-33
Identity = 75/148 (50.68%), Postives = 99/148 (66.89%), Query Frame = 3
Query:   93 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQFTFKS 533
            + L+  D +I+ +IE+E  RQ  GIELIASENFTS +V+EA+GS LTNKY+EG PG RYYGG   +D+ E+L R R  + F+ +     VNVQP+SGS AN A Y +VL+P D ++G+ L  GGHLTHG   S  GK Y  + +   S
Sbjct:    4 NELKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHGSKVSFSGKLYNFVSYGLNS 147          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.643e-33
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            +++  D E++ +IE+E  RQ   IELIASENFTS AV+EA+GS LTNKY+EG PG RYYGG   +D++E L R RA + F  +      NVQP+SGS AN A Y AVL+P D IMG++L  GGHLTHG
Sbjct:    5 NIKVSDSEVYSIIEEENARQENNIELIASENFTSKAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDKVEELARERAKKLFKAE----HANVQPHSGSQANMAVYFAVLKPGDTIMGMNLTDGGHLTHG 128          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 4.643e-33
Identity = 77/127 (60.63%), Postives = 86/127 (67.72%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L+  D  I D I  E RRQ   +ELIASENF S AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  D     VNVQP+SGS AN     AVL+P DRIMGLDL  GGHLTHG
Sbjct:    6 LQRQDKGIFDAITAEVRRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTHG 128          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJB (Serine hydroxymethyltransferase OS=Synechococcus sp. GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.064e-33
Identity = 77/142 (54.23%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQF 521
            L   DP ++ LI++E  RQ   +E+IASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFIDEIE L   RA Q F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTHG   +  GK +R + +
Sbjct:    4 LAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTHGSPVNVSGKWFRVVHY 141          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJA (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.064e-33
Identity = 77/142 (54.23%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQF 521
            L   DP ++ LI++E  RQ   +E+IASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFIDEIE L   RA Q F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTHG   +  GK +R + +
Sbjct:   11 LAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLAHGGHLTHGSPVNVSGKWFRVVHY 148          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.064e-33
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG-YYTSGGKRYR 509
            L+  DP ++++ EKE +RQ   +E+IASENFTS AV+EA+GS  TNKY+EG PG RYYGG E+ D IE L   RA + F  +     VNVQP+SGS AN   Y A+L+P+D+I+G+DL  GGHLTHG    + GK Y+
Sbjct:    4 LKNQDPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHGAKVNASGKIYQ 137          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.064e-33
Identity = 75/146 (51.37%), Postives = 98/146 (67.12%), Query Frame = 3
Query:   75 VNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYR 509
            ++EW +  L  VDPE+   +++EK+RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG EF+D++E L   RA + F  +      NVQP+SG+ AN   Y A LEP D ++G++L  GGHLTHG   +  GK +R
Sbjct:    1 MSEWKH--LHQVDPEVAAAMDREKKRQKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAE----HANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTHGSPVNISGKYFR 140          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_ANASP (Serine hydroxymethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.064e-33
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 3
Query:   99 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHG 479
            L   DP I  LI +E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFID+IE +   RA Q F  D      NVQP+SG+ ANFA +  +L+P D+IMG+DL  GGHLTHG
Sbjct:    9 LTNSDPAIAGLINQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDKIEQIAIDRAKQLFGAD----HANVQPHSGAQANFAVFLTLLKPGDKIMGMDLSHGGHLTHG 131          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_ACHLI (Serine hydroxymethyltransferase OS=Acholeplasma laidlawii (strain PG-8A) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.064e-33
Identity = 74/137 (54.01%), Postives = 93/137 (67.88%), Query Frame = 3
Query:   96 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRY 506
            +L+  D E+ + I++E  RQ   IELIASENF S AV+EA GS LTNKY+EG P  RYYGG EF+D++E L + R  Q F+       VNVQP+SGS AN A Y A+L P DR++G+DL +GGHLTHGY  S    Y
Sbjct:    2 TLKDYDLELFNAIQREDNRQKEHIELIASENFVSDAVLEAQGSILTNKYAEGYPNKRYYGGCEFVDQVEILAQDRLKQIFNAK----FVNVQPHSGSQANAAVYQALLSPGDRVLGMDLNAGGHLTHGYKLSFSGHY 134          
BLAST of EY675117 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPX (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH8102) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.920e-33
Identity = 78/145 (53.79%), Postives = 96/145 (66.21%), Query Frame = 3
Query:   90 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRRLQF 521
            N  L   DP I  LIEKE++RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG E +D IE L   RA + F      W  NVQP+SG+ ANFA + A+L+P D IMGLDL  GGHLTHG   +  GK +  +Q+
Sbjct:   10 NKGLAAADPAIAALIEKEQQRQETHLELIASENFASRAVMDAQGSVLTNKYAEGLPSKRYYGGCEHVDAIEELAIERAKELF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTHGSPVNVSGKWFNVVQY 150          
The following BLAST results are available for this feature:
BLAST of EY675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOK14.643e-3350.68Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOAB4.643e-3356.25Serine hydroxymethyltransferase OS=Clostridium ace... [more]
GLYA_CHLPB4.643e-3360.63Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_SYNJB6.064e-3354.23Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNJA6.064e-3354.23Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_NITSB6.064e-3352.90Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_HELMI6.064e-3351.37Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_ANASP6.064e-3358.27Serine hydroxymethyltransferase OS=Anabaena sp. (s... [more]
GLYA_ACHLI6.064e-3354.01Serine hydroxymethyltransferase OS=Acholeplasma la... [more]
GLYA_SYNPX7.920e-3353.79Serine hydroxymethyltransferase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-C11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675117 ID=EY675117; Name=EY675117; organism=Citrus sinensis; type=EST; length=983bp
CCACGCGTCCGCATTTTCCCTTTTTTTCGTTTTCAGTGAATCCAGAAAAC
GGAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCT
TGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCC
GACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTC
GCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGG
AATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCG
AGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACC
CAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGC
CGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACT
TGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCCGGCGGGAAA
AGATATCGGCGACTTCAATTTACTTTCAAGAGCTTGGCCCGTACAAGGGT
GAAATTTCGAATACTGGGGTAAATTGGATTACGAAAAATTGGAGGAAAAG
GGGTTGGATTTTAGGGCCAAAGTTAATCATTTGCGGGGGGGGAATGGGTA
ACCGAAGGGGACTGGGGAATTATGGCAAATTTCAAAACTGGGTAGAGAAA
AATTGGGGGGGCCCTTTTGCCCCTGGGGTAAGGCGCGCAAATACTGGGGC
CTGGGTGGGCGCAAGGGGACGCTGCGGAGCCCCTTTAAAAAGAGGGGACC
AAGTAGCCCCACAAACAAAATGAAAAAGAACAGGGAGGGGGTGCAAAAGG
GGGGAGGGGATAGAGTCTTGTATAACAAAAAAGAGAGAGCAACAACGCAC
GACAGAGGAGGGGGGGAGAGACGCGAAAGGGGGGAGGAGTGTGTGTGTGT
AATGGTATGAAGAGGAAGGAGGAGTTAACGGAA
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