EY675113 | Citrus Genome Database

Overview


Name	EY675113
Unique Name	EY675113
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	988

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.109e-22
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 2

Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL++
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93

HSP 2 Score: 37.7354 bits (86), Expect = 8.109e-22
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 3

Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 497
            K  WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   92 KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.109e-22
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 2

Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL++
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93

HSP 2 Score: 37.7354 bits (86), Expect = 8.109e-22
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 3

Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 497
            K  WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   92 KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.109e-22
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 2

Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL++
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93

HSP 2 Score: 37.7354 bits (86), Expect = 8.109e-22
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 3

Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 497
            K  WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   92 KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.109e-22
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 2

Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            +R++++ +RL  +P  GI   P ++N   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL++
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93

HSP 2 Score: 37.7354 bits (86), Expect = 8.109e-22
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 3

Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 497
            K  WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:   92 KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.039e-21
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 2

Query:  113 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL 364
            LM +++ L ++P      +  +NN+  W+ ++ GP DT ++GG FK  + F  +YP +PP + F S M+HPNIY+DG +C+ IL
Sbjct:    6 LMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISIL 89

HSP 2 Score: 42.3578 bits (98), Expect = 1.039e-21
Identity = 22/58 (37.93%), Postives = 34/58 (58.62%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF-----SENKREYNRRVREIVEQS 533
            WSP+  +  IL S+ SLL +PN +SPAN +AA+ +      E+   Y   V+  V++S
Sbjct:  101 WSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.041e-21
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 2

Query:   83 ATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A +ST AK R+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++
Sbjct:   51 AKLSTSAK-RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 145

HSP 2 Score: 38.891 bits (89), Expect = 1.041e-21
Identity = 19/51 (37.25%), Postives = 27/51 (52.94%), Query Frame = 3

Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            K  WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:  144 KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.041e-21
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 2

Query:   83 ATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A +ST AK R+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++
Sbjct:   51 AKLSTSAK-RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 145

HSP 2 Score: 38.891 bits (89), Expect = 1.041e-21
Identity = 19/51 (37.25%), Postives = 27/51 (52.94%), Query Frame = 3

Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            K  WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:  144 KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.348e-21
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2

Query:   95 TPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNXVE 379
            T ++K LM + K LQ++P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL   V+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD 102

HSP 2 Score: 38.1206 bits (87), Expect = 1.348e-21
Identity = 22/67 (32.84%), Postives = 37/67 (55.22%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE--NKREYNRRVREIVEQSWTAD*KSHESTG 569
            W+P  +V  IL S+ SLL +PN  SPAN +A+ +F +  + +  ++   EI+ +  +A     E  G
Sbjct:  114 WNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG 180

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.348e-21
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2

Query:   95 TPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNXVE 379
            T ++K LM + K LQ++P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL   V+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD 102

HSP 2 Score: 38.1206 bits (87), Expect = 1.348e-21
Identity = 22/67 (32.84%), Postives = 37/67 (55.22%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE--NKREYNRRVREIVEQSWTAD*KSHESTG 569
            W+P  +V  IL S+ SLL +PN  SPAN +A+ +F +  + +  ++   EI+ +  +A     E  G
Sbjct:  114 WNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG 180

[Close]

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.348e-21
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 2

Query:   95 TPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNXVE 379
            T ++K LM + K LQ++P  G      D +++  W   IFGP +T ++GG FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL   V+
Sbjct:    7 TSSQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVD 102

HSP 2 Score: 38.1206 bits (87), Expect = 1.348e-21
Identity = 22/67 (32.84%), Postives = 37/67 (55.22%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE--NKREYNRRVREIVEQSWTAD*KSHESTG 569
            W+P  +V  IL S+ SLL +PN  SPAN +A+ +F +  + +  ++   EI+ +  +A     E  G
Sbjct:  114 WNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDG 180

The following BLAST results are available for this feature:

BLAST of EY675113 vs. ExPASy Swiss-Prot

BLAST of EY675113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228


Match Name	E-value	Identity	Description
UBE2N_PONAB	8.109e-22	43.18	Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ...	[more]
UBE2N_MOUSE	8.109e-22	43.18	Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ...	[more]
UBE2N_HUMAN	8.109e-22	43.18	Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ...	[more]
UBE2N_BOVIN	8.109e-22	43.18	Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN...	[more]
UBC_ASFP4	1.039e-21	39.29	Ubiquitin-conjugating enzyme E2 OS=African swine f...	[more]
UB2E2_MOUSE	1.041e-21	42.71	Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus...	[more]
UB2E2_HUMAN	1.041e-21	42.71	Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens...	[more]
UB2R2_RABIT	1.348e-21	41.67	Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ...	[more]
UB2R2_MOUSE	1.348e-21	41.67	Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus...	[more]
UB2R2_HUMAN	1.348e-21	41.67	Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-006-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY675113 ID=EY675113; Name=EY675113; organism=Citrus sinensis; type=EST; length=988bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCANGTGGAGTCCTATATATGATGTTGCAGC
TATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCC
CTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTAC
AACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGACTAAAA
GTCCCATGAAAGCACCGGCCGGTTATGCTGGAGAAATAAAAGATGAAAAC
TGGGGCTGGTGGGGTTGGTTTGGTCAAAATAATGGAACCCGTATTCAATC
GGATTTCAGGTGCATTGTTAATTAAAAAAATCCCCTTCGAATCTTTCCTC
CCCAAAAACCCTGGGTGGAACCCTTGGTTATTTTTCCAACATTTCCCTCT
TCCTTTTCCAAAACTTTCCGGGTAAATGTAATTTTATTGGGGACATTTTG
GTAAGGGGGGTTTTTTGGGGGGCGGGAAAACCCTGTGGATGTTGTTCTTT
AAAAAAACCCCCCCAAAAAAGAAACCCCTTTTTTTTTTTGGGAAATTTTT
TTTATGGGGGGATATTTTTTTGGGGGGATTTGTGGTGGGCGGGGGGGCGC
CCAAAAAAAAATAAAAAAAAAAAAAGGAAACAAAAACA