EY675113

Overview
NameEY675113
Unique NameEY675113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.783e-18
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 2 
Query:   80 NATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            N   ++PAK RL +D + L+  P   ++    DN+  +   +I  PD+  + GG F+ T  F E YP  PP V   +++FHPNI   G ICL+IL+
Sbjct:   26 NTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILR 121

HSP 2 Score: 43.5134 bits (101), Expect = 2.783e-18
Identity = 19/47 (40.43%), Postives = 28/47 (59.57%), Query Frame = 3 
Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 515
            WSP  D+  I+  + SL  +PN N P N EAA + +++K E+   VR
Sbjct:  124 WSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.601e-18
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            +++ ++   L  DPP GI   P + +I      I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLK 100

HSP 2 Score: 42.3578 bits (98), Expect = 3.601e-18
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 527
            K  W     +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:  100 KKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTE 153
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.605e-18
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 2 
Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            K++ R+   L  DPP GI     D +I    A I GP  TP++GG FK+ L   +D+P  PP   F++++FHPN+  +G IC++ L+
Sbjct:   17 KQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLK 103

HSP 2 Score: 40.4318 bits (93), Expect = 3.605e-18
Identity = 18/54 (33.33%), Postives = 28/54 (51.85%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 527
            K  W P   +  +L +++ LL  PNP S  N EA +L  E   +Y++R +   E
Sbjct:  103 KKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTE 156
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.682e-18
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            +R+ ++   L  DPP GI   P + +I      I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLK 100

HSP 2 Score: 41.2022 bits (95), Expect = 4.682e-18
Identity = 21/50 (42.00%), Postives = 25/50 (50.00%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 515
            K  W     +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R
Sbjct:  100 KKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAR 149
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.685e-18
Identity = 30/93 (32.26%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:   89 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            +S    +++MR+ + ++  PP GI     ++++    A+I GP  TP+  G F++ L  ++D+P  PP   F++++FHPN+ A+G IC++ L+
Sbjct:   11 LSPQTIRQVMRELQEMENTPPEGIKVLINESDVTDIQALIDGPAGTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLK 103

HSP 2 Score: 41.2022 bits (95), Expect = 4.685e-18
Identity = 20/54 (37.04%), Postives = 29/54 (53.70%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 527
            K  W P   +  IL +I+ LL  PNP S  N EA ++  E   +Y++R R + E
Sbjct:  103 KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.696e-18
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:  110 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            RL R+   L  +PP GI+     + +    A I G  +TP++ G FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L+
Sbjct:    6 RLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 91

HSP 2 Score: 41.5874 bits (96), Expect = 4.696e-18
Identity = 17/52 (32.69%), Postives = 30/52 (57.69%), Query Frame = 3 
Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 530
            W P  ++A +LT IQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+
Sbjct:   98 WRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEK 149
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.696e-18
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 2 
Query:  110 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            RL R+   L  +PP GI+     + +    A I G  +TP++ G FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L+
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLK 91

HSP 2 Score: 43.1282 bits (100), Expect = 4.696e-18
Identity = 18/52 (34.62%), Postives = 31/52 (59.62%), Query Frame = 3 
Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 530
            W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+
Sbjct:   98 WRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 149
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.076e-18
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  119 RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            ++   L  DPP GI   P + ++      I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+
Sbjct:   18 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLK 100

HSP 2 Score: 43.1282 bits (100), Expect = 6.076e-18
Identity = 22/54 (40.74%), Postives = 28/54 (51.85%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 527
            K  W+    +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:  100 KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.076e-18
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  119 RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            ++   L  DPP GI   P + ++      I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+
Sbjct:   18 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLK 100

HSP 2 Score: 43.1282 bits (100), Expect = 6.076e-18
Identity = 22/54 (40.74%), Postives = 28/54 (51.85%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 527
            K  W+    +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:  100 KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153
[Close]
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.076e-18
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  119 RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            ++   L  DPP GI   P + ++      I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+
Sbjct:   18 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLK 100

HSP 2 Score: 43.1282 bits (100), Expect = 6.076e-18
Identity = 22/54 (40.74%), Postives = 28/54 (51.85%), Query Frame = 3 
Query:  366 KIXWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 527
            K  W+    +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:  100 KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153
The following BLAST results are available for this feature:
BLAST of EY675113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
UBC12_CANGA2.783e-1837.50NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBE2S_XENTR3.601e-1834.48Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_NEMVE3.605e-1839.08Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UB2SB_XENLA4.682e-1835.63Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_DROWI4.685e-1832.26Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]
UBE2T_BOVIN4.696e-1839.53Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2T_HUMAN4.696e-1839.53Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2S_RAT6.076e-1834.94Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_MOUSE6.076e-1834.94Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UB2SA_XENLA6.076e-1834.94Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675113 ID=EY675113; Name=EY675113; organism=Citrus sinensis; type=EST; length=988bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCANGTGGAGTCCTATATATGATGTTGCAGC
TATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCC
CTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTAC
AACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGACTAAAA
GTCCCATGAAAGCACCGGCCGGTTATGCTGGAGAAATAAAAGATGAAAAC
TGGGGCTGGTGGGGTTGGTTTGGTCAAAATAATGGAACCCGTATTCAATC
GGATTTCAGGTGCATTGTTAATTAAAAAAATCCCCTTCGAATCTTTCCTC
CCCAAAAACCCTGGGTGGAACCCTTGGTTATTTTTCCAACATTTCCCTCT
TCCTTTTCCAAAACTTTCCGGGTAAATGTAATTTTATTGGGGACATTTTG
GTAAGGGGGGTTTTTTGGGGGGCGGGAAAACCCTGTGGATGTTGTTCTTT
AAAAAAACCCCCCCAAAAAAGAAACCCCTTTTTTTTTTTGGGAAATTTTT
TTTATGGGGGGATATTTTTTTGGGGGGATTTGTGGTGGGCGGGGGGGCGC
CCAAAAAAAAATAAAAAAAAAAAAAGGAAACAAAAACA
back to top