EY675113

Overview
NameEY675113
Unique NameEY675113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.055e-12
Identity = 26/92 (28.26%), Postives = 51/92 (55.43%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+
Sbjct:   27 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR 116          

HSP 2 Score: 43.1282 bits (100), Expect = 1.055e-12
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 3
Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 515
            W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:  119 WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.055e-12
Identity = 26/92 (28.26%), Postives = 51/92 (55.43%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+
Sbjct:   27 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR 116          

HSP 2 Score: 43.1282 bits (100), Expect = 1.055e-12
Identity = 16/47 (34.04%), Postives = 27/47 (57.45%), Query Frame = 3
Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 515
            W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:  119 WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.334e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  110 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDIL 364
            R+ RD   + ++PP G+   P   ++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSIL 194          

HSP 2 Score: 28.1054 bits (61), Expect = 1.334e-12
Identity = 15/48 (31.25%), Postives = 25/48 (52.08%), Query Frame = 3
Query:  375 WSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 515
            WSP   ++++L SIQSL+ + P  N P   +       + + YN  +R
Sbjct:  202 WSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIR 247          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.334e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  110 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDIL 364
            R+ RD   + ++PP G+   P   ++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSIL 194          

HSP 2 Score: 28.1054 bits (61), Expect = 1.334e-12
Identity = 15/48 (31.25%), Postives = 25/48 (52.08%), Query Frame = 3
Query:  375 WSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 515
            WSP   ++++L SIQSL+ + P  N P   +       + + YN  +R
Sbjct:  202 WSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIR 247          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.334e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:  110 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDIL 364
            R+ RD   + ++PP G+   P   ++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSIL 192          

HSP 2 Score: 28.1054 bits (61), Expect = 1.334e-12
Identity = 15/48 (31.25%), Postives = 25/48 (52.08%), Query Frame = 3
Query:  375 WSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 515
            WSP   ++++L SIQSL+ + P  N P   +       + + YN  +R
Sbjct:  200 WSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIR 245          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.047e-12
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            KR++++ K L      GI+  P + +I    AV+ GP  TP++GG FK  L  + D+P  PP   F++++FHPN+   G IC++ L+
Sbjct:   12 KRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLK 98          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.492e-12
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPN 328
            A KRL +++K + ++PP  I   P ++NI+ W+ +I GP DTP+ GG +  TL F  DYP KPP +R +  +  F PN
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPN 83          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.561e-12
Identity = 30/89 (33.71%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  101 AKKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL 364
            A KR+ ++ + LQ++ P  +     +++N+++W+A++  P+  P++   F+L + F  +YP +PPTV+F +R++HPN+  DG +CL I+
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPII 90          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.780e-12
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            K+L ++ K L + PP GI     D +     A I GP  TP++ G F++ L  + D+P+ PP   F++++FHPN+ ++G IC++ L+
Sbjct:   13 KQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLK 99          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 1.016e-11
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A  R++++ + LQ+ PP  +     D+ N+++W+A++  PD  P+    F L + F  +YP KPP ++F ++++HPN+  +G ICL I+ +
Sbjct:    3 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISS 92          
The following BLAST results are available for this feature:
BLAST of EY675113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
UBC12_HUMAN1.055e-1228.26NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN1.055e-1228.26NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBE2Z_RAT1.334e-1235.56Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE1.334e-1235.56Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN1.334e-1235.56Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBE2S_DICDI2.047e-1236.78Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC6_YEAST3.492e-1242.31Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UB2L6_BOVIN4.561e-1233.71Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBC22_ARATH7.780e-1235.63Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UB2L6_HUMAN1.016e-1132.97Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675113 ID=EY675113; Name=EY675113; organism=Citrus sinensis; type=EST; length=988bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCANGTGGAGTCCTATATATGATGTTGCAGC
TATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCC
CTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTAC
AACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGACTAAAA
GTCCCATGAAAGCACCGGCCGGTTATGCTGGAGAAATAAAAGATGAAAAC
TGGGGCTGGTGGGGTTGGTTTGGTCAAAATAATGGAACCCGTATTCAATC
GGATTTCAGGTGCATTGTTAATTAAAAAAATCCCCTTCGAATCTTTCCTC
CCCAAAAACCCTGGGTGGAACCCTTGGTTATTTTTCCAACATTTCCCTCT
TCCTTTTCCAAAACTTTCCGGGTAAATGTAATTTTATTGGGGACATTTTG
GTAAGGGGGGTTTTTTGGGGGGCGGGAAAACCCTGTGGATGTTGTTCTTT
AAAAAAACCCCCCCAAAAAAGAAACCCCTTTTTTTTTTTGGGAAATTTTT
TTTATGGGGGGATATTTTTTTGGGGGGATTTGTGGTGGGCGGGGGGGCGC
CCAAAAAAAAATAAAAAAAAAAAAAGGAAACAAAAACA
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