EY675113

Overview
NameEY675113
Unique NameEY675113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.733e-11
Identity = 30/87 (34.48%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  107 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            +++ ++   L   PP G+   P + +I    A I GP  TP++GG FK+ L   +D+P  PP   F++++FHPN+  +G IC++ L+
Sbjct:   16 RQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLK 102          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.733e-11
Identity = 39/111 (35.14%), Postives = 55/111 (49.55%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICLDILQNXVESYI*CCSYTDLHP 418
            S  A KRLM+++  LQ++P   +   P   NI+ W+ +I GP DTP++GG +  TL F  DYP KPP +R +  S  F  N                     C S++D HP
Sbjct:    3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRL------------------CLSFSDFHP 95          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.733e-11
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNXVESYI*CCSYTDLHPVA 424
            S  A KRL +++K +  +PP  I  AP ++NI+ W+ VI GP  TP++ G +  TL F  DYP  PP +R ++    PN                E+   C S +D HP A
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMIT----PN------------GRFKENTRLCLSMSDYHPEA 97          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.264e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAG---ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN 370
            M+  A +R+ R+FK + +        I     D N       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 98          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.264e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAG---ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN 370
            M+  A +R+ R+FK + +        I     D N       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 98          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.264e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAG---ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN 370
            M+  A +R+ R+FK + +        I     D N       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 98          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 3.109e-11
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS 310
            S  ++KRL +++K +  +PP  +S  P D NI+ W+ VI GP  TP++ G +   L+F  +YP KPP++  ++
Sbjct:    3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMIT 75          

HSP 2 Score: 24.6386 bits (52), Expect = 3.109e-11
Identity = 11/31 (35.48%), Postives = 18/31 (58.06%), Query Frame = 3
Query:  336 RMEVSAWIYYKIXWSPIYDVAAILTSIQSLL 428
            R+ +S   Y+   W+P + VA ILT + S +
Sbjct:   85 RLCLSMSDYHPDTWNPAWSVATILTGLLSFM 115          
BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.313e-11
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  110 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 367
            RL +D   L       IS     +++M +   I  PDD  +  GTF  T Q +  YP++ P V+  ++++HPNI  +G++CL+IL+
Sbjct:   34 RLHKDISELNLPSSCSISFPNGKDDLMNFEVSI-KPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILR 118          

HSP 2 Score: 34.2686 bits (77), Expect = 5.313e-11
Identity = 12/47 (25.53%), Postives = 24/47 (51.06%), Query Frame = 3
Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 515
            W P+ ++  ++  +  L  +PN   P N +AA +  +N + +   VR
Sbjct:  121 WKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVR 167          
The following BLAST results are available for this feature:
BLAST of EY675113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
UBE2S_BRAFL1.733e-1134.48Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC6_SCHPO1.733e-1135.14Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UBC6_KLULA1.733e-1135.14Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBE2K_MOUSE2.264e-1137.76Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN2.264e-1137.76Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN2.264e-1137.76Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC6_DEBHA3.109e-1136.99Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
RCE1_ARATH5.313e-1133.72NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675113 ID=EY675113; Name=EY675113; organism=Citrus sinensis; type=EST; length=988bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCANGTGGAGTCCTATATATGATGTTGCAGC
TATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCC
CTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTAC
AACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGACTAAAA
GTCCCATGAAAGCACCGGCCGGTTATGCTGGAGAAATAAAAGATGAAAAC
TGGGGCTGGTGGGGTTGGTTTGGTCAAAATAATGGAACCCGTATTCAATC
GGATTTCAGGTGCATTGTTAATTAAAAAAATCCCCTTCGAATCTTTCCTC
CCCAAAAACCCTGGGTGGAACCCTTGGTTATTTTTCCAACATTTCCCTCT
TCCTTTTCCAAAACTTTCCGGGTAAATGTAATTTTATTGGGGACATTTTG
GTAAGGGGGGTTTTTTGGGGGGCGGGAAAACCCTGTGGATGTTGTTCTTT
AAAAAAACCCCCCCAAAAAAGAAACCCCTTTTTTTTTTTGGGAAATTTTT
TTTATGGGGGGATATTTTTTTGGGGGGATTTGTGGTGGGCGGGGGGGCGC
CCAAAAAAAAATAAAAAAAAAAAAAGGAAACAAAAACA
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