EY675113 | Citrus Genome Database

Overview


Name	EY675113
Unique Name	EY675113
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	988

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.094e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 54.299 bits (129), Expect = 2.094e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.094e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 54.299 bits (129), Expect = 2.094e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.094e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 54.299 bits (129), Expect = 2.094e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.094e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 54.299 bits (129), Expect = 2.094e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.094e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 54.299 bits (129), Expect = 2.094e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.726e-30
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   LQ+DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F ++++HPNI ++GSICLDIL++
Sbjct:    2 ALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRS 91

HSP 2 Score: 51.9878 bits (123), Expect = 2.726e-30
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   V+ +L SI SLLCDPNP+ P   E A  +  ++ +YNR  RE
Sbjct:   93 WSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.550e-30
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L QDPPA  S  P   ++  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRS 91

HSP 2 Score: 53.9138 bits (128), Expect = 3.550e-30
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.550e-30
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L QDPPA  S  P   ++  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRS 91

HSP 2 Score: 53.9138 bits (128), Expect = 3.550e-30
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.020e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 52.7582 bits (125), Expect = 6.020e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

BLAST of EY675113 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.020e-30
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 2

Query:  101 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN 370
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS 91

HSP 2 Score: 52.7582 bits (125), Expect = 6.020e-30
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 3

Query:  375 WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 518
            WSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:   93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140

The following BLAST results are available for this feature:

BLAST of EY675113 vs. ExPASy Swiss-Prot

BLAST of EY675113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228


Match Name	E-value	Identity	Description
UB2D2_XENLA	2.094e-30	48.89	Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev...	[more]
UB2D2_RAT	2.094e-30	48.89	Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve...	[more]
UB2D2_MOUSE	2.094e-30	48.89	Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus...	[more]
UB2D2_HUMAN	2.094e-30	48.89	Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens...	[more]
UB2D2_BOVIN	2.094e-30	48.89	Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G...	[more]
UB2D4_HUMAN	2.726e-30	48.89	Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens...	[more]
U2D2B_RAT	3.550e-30	47.78	Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv...	[more]
U2D2B_MOUSE	3.550e-30	47.78	Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu...	[more]
UB2D3_RAT	6.020e-30	48.89	Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve...	[more]
UB2D3_PONAB	6.020e-30	48.89	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-401-006-C04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY675113 ID=EY675113; Name=EY675113; organism=Citrus sinensis; type=EST; length=988bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCANGTGGAGTCCTATATATGATGTTGCAGC
TATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCC
CTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTAC
AACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGACTAAAA
GTCCCATGAAAGCACCGGCCGGTTATGCTGGAGAAATAAAAGATGAAAAC
TGGGGCTGGTGGGGTTGGTTTGGTCAAAATAATGGAACCCGTATTCAATC
GGATTTCAGGTGCATTGTTAATTAAAAAAATCCCCTTCGAATCTTTCCTC
CCCAAAAACCCTGGGTGGAACCCTTGGTTATTTTTCCAACATTTCCCTCT
TCCTTTTCCAAAACTTTCCGGGTAAATGTAATTTTATTGGGGACATTTTG
GTAAGGGGGGTTTTTTGGGGGGCGGGAAAACCCTGTGGATGTTGTTCTTT
AAAAAAACCCCCCCAAAAAAGAAACCCCTTTTTTTTTTTGGGAAATTTTT
TTTATGGGGGGATATTTTTTTGGGGGGATTTGTGGTGGGCGGGGGGGCGC
CCAAAAAAAAATAAAAAAAAAAAAAGGAAACAAAAACA