EY675105

Overview
NameEY675105
Unique NameEY675105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEAE (Protein translocase subunit secA OS=Pseudomonas aeruginosa GN=secA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.049e-25
Identity = 63/106 (59.43%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPV------RNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQFQH EAP +E   V GEE ++    APV      RNEQK+GRNE C CGSGKK+KHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPAEEEARLRREAEELAKRMQFQHAEAPSMEQA-VAGEEEELPEGPAPVVPLEPVRNEQKIGRNEPCPCGSGKKYKHCHG 913          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEAB (Protein translocase subunit secA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=secA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.049e-25
Identity = 63/106 (59.43%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPV------RNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQFQH EAP +E   V GEE ++    APV      RNEQK+GRNE C CGSGKK+KHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPAEEEARLRREAEELAKRMQFQHAEAPSMEQA-VAGEEEELPEGPAPVVPLEPVRNEQKIGRNEPCPCGSGKKYKHCHG 913          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEA8 (Protein translocase subunit secA OS=Pseudomonas aeruginosa (strain LESB58) GN=secA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.049e-25
Identity = 63/106 (59.43%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPV------RNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQFQH EAP +E   V GEE ++    APV      RNEQK+GRNE C CGSGKK+KHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPAEEEARLRREAEELAKRMQFQHAEAPSMEQA-VAGEEEELPEGPAPVVPLEPVRNEQKIGRNEPCPCGSGKKYKHCHG 913          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEMY (Protein translocase subunit secA OS=Pseudomonas mendocina (strain ymp) GN=secA PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.348e-24
Identity = 60/99 (60.61%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            LF ELL+SIKRD+IRVLSHVQVRREDP                 MQFQH EA  L A +   EE  VA A APVR+E K+GRNE C CGSGKK+KHCHG
Sbjct:  810 LFQELLESIKRDTIRVLSHVQVRREDPAEEEARLRREAEALAERMQFQHAEASALAAEQDGAEEGAVATATAPVRSENKVGRNEPCPCGSGKKYKHCHG 908          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEA7 (Protein translocase subunit secA OS=Pseudomonas aeruginosa (strain PA7) GN=secA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.348e-24
Identity = 62/106 (58.49%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPV------RNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQFQH EAP +E   V GE+ ++    APV      RNEQK+GRNE C CGSGKK+KHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPAEEEARLRREAEELAKRMQFQHAEAPSMEQA-VAGEDEELPEGPAPVVPLEPVRNEQKIGRNEPCPCGSGKKYKHCHG 913          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEU5 (Protein translocase subunit secA OS=Pseudomonas stutzeri (strain A1501) GN=secA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.261e-22
Identity = 59/105 (56.19%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVD--VALAQAPVRNEQKLGRNELCWCGSGKKFKHCHGXNQ 309
            TLF +LL+SIKRDSIRVLSHVQVRREDP                 MQFQH E   L+ PE    EV+    +A A VR E K+GRNE C CGSGKK+KHCHG  Q
Sbjct:  809 TLFQDLLESIKRDSIRVLSHVQVRREDPAEEEARLRHEAEELAKRMQFQHAEVSALDQPEEEPAEVEGQPDVAVASVRTEPKIGRNEPCPCGSGKKYKHCHGQVQ 913          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_AZOVD (Protein translocase subunit secA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=secA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.486e-20
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVAL-----AQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            LF  LL+SIKRD+IRVLSHVQVRREDP                 MQFQH  A  L AP+   ++++V         APVR E K+GRNE C CGSGKK+KHCHG
Sbjct:  810 LFQSLLESIKRDAIRVLSHVQVRREDPAEEEERLRREAEALARRMQFQHAAASAL-APQAEEDDLEVVEEVPLPGTAPVRPEPKIGRNEPCPCGSGKKYKHCHG 912          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANCP (Protein translocase subunit secA OS=Xanthomonas campestris pv. campestris GN=secA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.183e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +A G  A E + E++    A  PV    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVINLLARVRIRSEEEVAELEEQERRQAEARLLASQFQHQDAGGYGADEEV-EQMQGGNAPVPVSQVTRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANCB (Protein translocase subunit secA OS=Xanthomonas campestris pv. campestris (strain B100) GN=secA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.183e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +A G  A E + E++    A  PV    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVINLLARVRIRSEEEVAELEEQERRQAEARLLASQFQHQDAGGYGADEEV-EQMQGGNAPVPVSQVTRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANC8 (Protein translocase subunit secA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=secA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.183e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +A G  A E + E++    A  PV    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVINLLARVRIRSEEEVAELEEQERRQAEARLLASQFQHQDAGGYGADEEV-EQMQGGNAPVPVSQVTRDEPKVGRNDPCPCGSGKKYKHCHG 909          
The following BLAST results are available for this feature:
BLAST of EY675105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
SECA_PSEAE6.049e-2559.43Protein translocase subunit secA OS=Pseudomonas ae... [more]
SECA_PSEAB6.049e-2559.43Protein translocase subunit secA OS=Pseudomonas ae... [more]
SECA_PSEA86.049e-2559.43Protein translocase subunit secA OS=Pseudomonas ae... [more]
SECA_PSEMY1.348e-2460.61Protein translocase subunit secA OS=Pseudomonas me... [more]
SECA_PSEA71.348e-2458.49Protein translocase subunit secA OS=Pseudomonas ae... [more]
SECA_PSEU51.261e-2256.19Protein translocase subunit secA OS=Pseudomonas st... [more]
SECA_AZOVD4.486e-2052.88Protein translocase subunit secA OS=Azotobacter vi... [more]
SECA_XANCP1.183e-1240.38Protein translocase subunit secA OS=Xanthomonas ca... [more]
SECA_XANCB1.183e-1240.38Protein translocase subunit secA OS=Xanthomonas ca... [more]
SECA_XANC81.183e-1240.38Protein translocase subunit secA OS=Xanthomonas ca... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-B04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675105 ID=EY675105; Name=EY675105; organism=Citrus sinensis; type=EST; length=978bp
ACGCTGTTCTCCGAGCTGCTGGATTCGATCAAGCGCGATTCGATTCGTGT
GCTGTCCCACGTTCAGGTGCGTCGCGAAGACCCGATCGAGGAAGAAGCCC
GCCTGCGTCAGGAAGCCGAGGCACTGGCTGCGCGCATGCAGTTCCAGCAC
GACGAAGCACCTGGCCTTGAGGCTCCGGAAGTGTTGGGTGAAGAGGTCGA
TGTGGCCCTGGCTCAAGCTCCGGTGCGCAATGAGCAGAAGCTGGGTCGCA
ATGAACTGTGCTGGTGCGGTTCGGGCAAGAAGTTCAAACACTGCCACGGC
NGAAATCAACTAAGATTTTCGTCTGACGCTGCAACACCCCGCGCCGCGAC
CGGCATCAGCCGTCGCGGCGTTTTGCCATTTTGTCACCGTCGAGAGTGAC
GGGTCACACATCCACTATTTTTAGGAGCGCATTCATGGCTGTTGGTCTTG
GGCCTTTGCCCACGTTGCCCCCGGTTGGCGGTTTTGAATTCGGTATGGCT
TCGGCCGGGTTCAAACGCCCGGGGGCCAAGGGAGGTGGTGGTGATGGCCT
TTGCCAAAAGGTCCACCCGCCCCGGGTGTGTTCACCCTGAAAGGGTTTTG
GCCCGGCTCCCGGTGATTTTGGGCCAACAAGCGGGTTGAAAGGGCCCGGG
GGGGTTCACTGGGTAAGCCATCACTGGGCAAGGCACCCACCCCGGGCCCC
CGGAAAACCAGGGGTTTGGAGCACTGTTCGCCCCCAACTTTGCGCCGGAA
GGGAGGAAAAAACTGAGAAGGGGTTATTAATATACACAACGAGTGACCCA
CCACCATAGCCCCCCACAGAAGATATGAATGATGGAGCCAATTACGCTCG
CACTAACAAACAATCGCAGATGAGAGACGTGTCTTTGTCGATGGCCCCAA
CAAATATGACGGATTTACAAGAAGGTCTCGAGTGGGTGTGTGACACAGCG
NCGAGGTGACCGCTAGTGCTGCACACAC
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