EY675105

Overview
NameEY675105
Unique NameEY675105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_CHRSD (Protein translocase subunit secA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=secA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.545e-12
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPG-----LEAPEVLGEEVDVALAQAPVRNE-QKLGRNELCWCGSGKKFKHCHG 300
            LF  LL +IK D IR+LSHVQVRR++ +                + Q  H++A        E+ E  GE  D A    PVR +  K+GRN+LC CGSGKK+KHCHG
Sbjct:  807 LFQALLGNIKHDVIRILSHVQVRRQEEVDELERERRATLERERAVSQPVHEDAVASAEAVAESEEASGESADDA---QPVRRDGPKVGRNDLCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANC5 (Protein translocase subunit secA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=secA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.443e-12
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +  G  A E + E++    A  PV    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVINLLARVRIRSEEEVAELEEQERLQAQARLMASQFQHQDVGGYGAEEEV-EQMQGGNAPVPVSQVTRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANAC (Protein translocase subunit secA OS=Xanthomonas axonopodis pv. citri GN=secA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.443e-12
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +  G  A E + E++    A  PV    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVINLLARVRIRSEEEVAELEEQERLQAQARLMASQFQHQDVGGYGADEEV-EQMQGGNAPVPVSQVTRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANOR (Protein translocase subunit secA OS=Xanthomonas oryzae pv. oryzae GN=secA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.873e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGL----EAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +  G     EA +V      V ++Q   R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVIHLLARVRIRSEEEVAELEEQERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPVSQV-TRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANOM (Protein translocase subunit secA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=secA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.873e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGL----EAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +  G     EA +V      V ++Q   R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVIHLLARVRIRSEEEVAELEEQERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPVPVSQV-TRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_STRMK (Protein translocase subunit secA OS=Stenotrophomonas maltophilia (strain K279a) GN=secA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.873e-12
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFS++L+++KR+ + +LS V++R ++ +                  QFQH +  G  A E   E   V  AQ  V    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSDMLENVKREVVTLLSRVRIRSDEEVQALEAAERQQAEARLSQSQFQHQDVGGYSADE---EAAQVQAAQQGVAQMQRDEPKIGRNDPCPCGSGKKYKHCHG 907          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_XANOP (Protein translocase subunit secA OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=secA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.308e-11
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGL----EAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            LFSE+L+++KR+ I +L+ V++R E+ +                  QFQH +  G     EA +V      + ++Q   R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSEMLENVKREVIHLLARVRIRSEEEVAELEEQERLHAQARLMASQFQHQDVGGYGTDEEAAQVQSGNAPLPVSQV-TRDEPKVGRNDPCPCGSGKKYKHCHG 909          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_STRM5 (Protein translocase subunit secA OS=Stenotrophomonas maltophilia (strain R551-3) GN=secA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.806e-11
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXM-QFQHDEAPGLEAPEVLGEEVDVALAQAPV----RNEQKLGRNELCWCGSGKKFKHCHG 300
            LFS++L+++KR+ + +LS V++R ++ +                  QFQH +     A E   E   V  AQ  +    R+E K+GRN+ C CGSGKK+KHCHG
Sbjct:  807 LFSDMLENVKREVVTLLSRVRIRSDEEVQALEAAERQQVEARLSQSQFQHQDVGSYSADE---EAAQVQAAQQGIAQVQRDEPKIGRNDPCPCGSGKKYKHCHG 907          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_IDILO (Protein translocase subunit secA OS=Idiomarina loihiensis GN=secA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.806e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    4 LFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEA-PGLEAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            LF+E+L+++K D + +LS V+VR ++ +                 +F+H+++ P  E P+   +  D A  Q PVR   K+GRNE C CGSGKK+KHCHG
Sbjct:  810 LFTEMLEALKLDVVTILSKVKVRAQEDVDAVDEQRKAADSAPR--EFRHEQSGPAAEEPQ---KNTDNAQGQ-PVRKGAKVGRNEPCPCGSGKKYKHCHG 903          
The following BLAST results are available for this feature:
BLAST of EY675105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
SECA_CHRSD1.545e-1243.40Protein translocase subunit secA OS=Chromohalobact... [more]
SECA_XANC53.443e-1239.42Protein translocase subunit secA OS=Xanthomonas ca... [more]
SECA_XANAC3.443e-1239.42Protein translocase subunit secA OS=Xanthomonas ax... [more]
SECA_XANOR5.873e-1238.46Protein translocase subunit secA OS=Xanthomonas or... [more]
SECA_XANOM5.873e-1238.46Protein translocase subunit secA OS=Xanthomonas or... [more]
SECA_STRMK5.873e-1238.46Protein translocase subunit secA OS=Stenotrophomon... [more]
SECA_XANOP1.308e-1137.50Protein translocase subunit secA OS=Xanthomonas or... [more]
SECA_STRM53.806e-1136.54Protein translocase subunit secA OS=Stenotrophomon... [more]
SECA_IDILO3.806e-1139.00Protein translocase subunit secA OS=Idiomarina loi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-B04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675105 ID=EY675105; Name=EY675105; organism=Citrus sinensis; type=EST; length=978bp
ACGCTGTTCTCCGAGCTGCTGGATTCGATCAAGCGCGATTCGATTCGTGT
GCTGTCCCACGTTCAGGTGCGTCGCGAAGACCCGATCGAGGAAGAAGCCC
GCCTGCGTCAGGAAGCCGAGGCACTGGCTGCGCGCATGCAGTTCCAGCAC
GACGAAGCACCTGGCCTTGAGGCTCCGGAAGTGTTGGGTGAAGAGGTCGA
TGTGGCCCTGGCTCAAGCTCCGGTGCGCAATGAGCAGAAGCTGGGTCGCA
ATGAACTGTGCTGGTGCGGTTCGGGCAAGAAGTTCAAACACTGCCACGGC
NGAAATCAACTAAGATTTTCGTCTGACGCTGCAACACCCCGCGCCGCGAC
CGGCATCAGCCGTCGCGGCGTTTTGCCATTTTGTCACCGTCGAGAGTGAC
GGGTCACACATCCACTATTTTTAGGAGCGCATTCATGGCTGTTGGTCTTG
GGCCTTTGCCCACGTTGCCCCCGGTTGGCGGTTTTGAATTCGGTATGGCT
TCGGCCGGGTTCAAACGCCCGGGGGCCAAGGGAGGTGGTGGTGATGGCCT
TTGCCAAAAGGTCCACCCGCCCCGGGTGTGTTCACCCTGAAAGGGTTTTG
GCCCGGCTCCCGGTGATTTTGGGCCAACAAGCGGGTTGAAAGGGCCCGGG
GGGGTTCACTGGGTAAGCCATCACTGGGCAAGGCACCCACCCCGGGCCCC
CGGAAAACCAGGGGTTTGGAGCACTGTTCGCCCCCAACTTTGCGCCGGAA
GGGAGGAAAAAACTGAGAAGGGGTTATTAATATACACAACGAGTGACCCA
CCACCATAGCCCCCCACAGAAGATATGAATGATGGAGCCAATTACGCTCG
CACTAACAAACAATCGCAGATGAGAGACGTGTCTTTGTCGATGGCCCCAA
CAAATATGACGGATTTACAAGAAGGTCTCGAGTGGGTGTGTGACACAGCG
NCGAGGTGACCGCTAGTGCTGCACACAC
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