EY675104

Overview
NameEY675104
Unique NameEY675104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675104_ssr112 microsatellite EY675104_ssr112:112..121. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675104_ssr169 microsatellite EY675104_ssr169:169..183. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675104_ssr215 microsatellite EY675104_ssr215:215..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.091e-15
Identity = 57/178 (32.02%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  301 SSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPL----------QDPQKQHINLENSITKDCGSSSKCNKFSSPFETAKH-------------------ETPRMLPI-LPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            S++++CYVHC++C+T+LAVSVP SSLF  VTVRCGHC+NLL+V +      +P             P     NL   + +  G +   N   S   +A H                   E PR  P   PP+KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEM-RSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 197          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.943e-14
Identity = 62/210 (29.52%), Postives = 85/210 (40.48%), Query Frame = 1
Query:  295 DLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM------VSALQAVPLQDPQK----------------------------QHINLENSITK----------DCGSSSKCNKFSSPF-------------ETAKHETPRMLPIL---PPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            D   E++CYVHC+YC+T+L VSVP SSLF  VTVRCGHC++LL VNM       +A  A P   P                                I+  NS T+             S++ C   +SP                AK  +PR    +   PP+KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 263          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.392e-11
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = 1
Query:  286 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLENSITKDCGSSSKCNKFSSPFETAKHETPRM-LPILPPKKRQKFLSPTKRLTRRKSKGLRA 672
            M L   SE +CYV C YCNT+LAV VPC  L + VTV+CGHC NL  ++        P+  P     +        C    +         T+   +PR    + PP+K+ +  S   R  R + + ++A
Sbjct:    1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLS-----PRPPMVQPLSPTDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKA 125          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB4_ARATH (Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.080e-11
Identity = 44/159 (27.67%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  310 RVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP---------LQDPQKQHINLENSITKDCGSSSKCNKFS-----SPFETAKHETPRMLPIL--PPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFP 738
            ++C+V C +C TIL VSVP +SL  +VTVRCGHC +LL+VN++ A   +P         L +  K+ +   + + ++    ++  + S     S  +    +  R+  ++  PP+KRQ+  S      + + + L+A                 WA+FP
Sbjct:   20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKA-SFIPLHLLASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFP 177          
The following BLAST results are available for this feature:
BLAST of EY675104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YAB3_ARATH2.091e-1532.02Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB3_ORYSJ3.943e-1429.52Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]
YABDL_ORYSJ2.392e-1131.54Protein DROOPING LEAF OS=Oryza sativa subsp. japon... [more]
YAB4_ARATH4.080e-1127.67Axial regulator YABBY 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-B02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675104 ID=EY675104; Name=EY675104; organism=Citrus sinensis; type=EST; length=1029bp
CACGCGTCCGATAGAAACCCACTACCCCACATATACTCTCCCCTACACTT
CACTCCCGATCAGACTTGTCCTTTCAGATTTTTTCCTTCTCTTTTTATCA
CCATTTTCTCCCTCTCTCTCTCCAAATAATTATTATTTATACATGAAATC
AAACCATTTTGTTTTGTTTTCTTCTTCTTCTTCGTCTTTGTCTTTCTTTT
AATTTGTTCAAGATTTGATTGATTGATAATAGAACTCTTGCGTTTCTATT
GTTTGTCGGTACACTTCTTGATCTCCACTGAAACTATGTCACTGGACTTG
TCATCTGAACGTGTTTGTTATGTTCACTGCAACTACTGCAACACCATTTT
AGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAACATTGTGACTGTTAGAT
GTGGGCATTGCGCCAATTTGCTAAATGTAAACATGGTATCTGCACTTCAA
GCAGTTCCTCTTCAAGACCCTCAGAAACAACACATAAACCTAGAAAATTC
CATTACTAAGGATTGTGGATCATCTTCAAAATGCAATAAGTTTTCTTCAC
CATTTGAGACTGCAAAACATGAAACTCCTCGAATGCTTCCTATTCTTCCC
CCAAAAAAAAGACAAAAATTCCTTTCTCCTACAAAAAGGTTAACAAGGAG
GAAATCCAAAGGATTAAGGGCAGTAACCCCGACACCACCCAAAAAAAAAC
TTTTAACACAACCAACAAAAAAATGGGCAAATTTTCCCCACATTTTCCCT
TTGGATTAAAACTGGGAGGGAAAAAACAAAAAAAAAAAAAAAAAAAGGTG
TCCCCCCCTAACCAAAAAGGGACCCCAAAAAATCCAAAGGGGAATTTCCA
AAAAAAAAAACCCTTTAATAAAAAAAAATATATTAAAGTGGGGAGAAAAA
ATCGCCCGGCCACCCCCCCGAACAAAAAAAAATCTTAAAATAAAAAATTT
TTGTTAAAAAAAACCGGGCGGAAAAAAACACACCAACACAAGTCTTTATA
ATAAATAAAAAAAAAAAAAATATATATTA
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