EY675056

Overview
NameEY675056
Unique NameEY675056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675056_ssr177 microsatellite EY675056_ssr177:177..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.983e-23
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+KG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGF+    V+ ISF
Sbjct:  103 LEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172

HSP 2 Score: 73.9442 bits (180), Expect = 1.575e-12
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PC
Sbjct:   57 CMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.983e-23
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGF+    V+ ISF
Sbjct:  104 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 172

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PC
Sbjct:   57 CMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.983e-23
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGF+    V+ ISF
Sbjct:  104 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 172

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PC
Sbjct:   57 CMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.983e-23
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+KG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGF+    V+ ISF
Sbjct:  103 LEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172

HSP 2 Score: 73.9442 bits (180), Expect = 1.575e-12
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PC
Sbjct:   57 CMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.983e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            ++G+VYRE++SSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGF+    V+ ISF
Sbjct:  105 ERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 173

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PC
Sbjct:   58 CMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPC 99
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.590e-23
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGF+    V+ ISF
Sbjct:  105 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 73.559 bits (179), Expect = 2.057e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PC
Sbjct:   58 CMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPC 99
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.590e-23
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGF+    V+ ISF
Sbjct:  105 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 72.4034 bits (176), Expect = 4.582e-12
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+PC
Sbjct:   58 CMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPC 99
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.418e-23
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            L+ G+VYREH+ SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGF+    V+ ISF  +  P
Sbjct:  101 LEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176

HSP 2 Score: 70.8626 bits (172), Expect = 1.333e-11
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPC
Sbjct:   55 CMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPC 96
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:  440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGF+    V+ ISF
Sbjct:  104 GFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISF 170

HSP 2 Score: 70.4774 bits (171), Expect = 1.741e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPL+ E L +E+ YL+R+GWIPC
Sbjct:   56 CMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPC 97
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+KG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGF+    V+ ISF
Sbjct:  103 LEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISF 172

HSP 2 Score: 74.7146 bits (182), Expect = 9.233e-13
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPC
Sbjct:   57 CMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPC 98
The following BLAST results are available for this feature:
BLAST of EY675056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RBS3_PEA1.983e-2370.00Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS3B_SOLLC1.983e-2369.57Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.983e-2369.57Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2_PEA1.983e-2370.00Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS1_SOLLC1.983e-2369.57Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_SOLTU2.590e-2368.12Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_SOLTU2.590e-2368.12Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOYBN4.418e-2361.84Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_ZANAE9.842e-2370.15Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA9.842e-2364.29Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675056 ID=EY675056; Name=EY675056; organism=Citrus sinensis; type=EST; length=992bp
TTTATTAATTTTCCTGTGAGCTTGTATGTTACATGGTGTGGCCACCAACT
GGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGA
AGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCT
GCTTGGAATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTC
TGTCTCTCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCT
TTAGGAGAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCAT
TCAATATCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTT
GGGTTAAGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTT
TTTTTTTGTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAACTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAG
GAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCTTTCGTCCGAATTAT
CGGATTTGAACAACAAGCGCCAGTGGAGTGGATCAGTTTTCCTTGCTGGC
CAGCCCCCAGGCGTCCAAGGTTCCCAATTTAATTGTGGTAACCCCCCAGG
CCATATTGGTTGATTATTATTATGGGTAACCCCCCAAAAAGGATCTTTCA
AATCATGGGGGGTTCGGGTTTGGGTTTAATTTGTGAATTAAGGGCGGGGT
TGGCGGCGGGCCCAAAACTTTTTTGGGTTTTCCCCCCCCACCTTGGGGTT
TTTTTTTTTTTTTTTTTATTTTTTTAAAAAAATTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCGGCCCC
CCCCCCTAAGGAGGGAATAACAAACCACGCTCTTTACAACGT
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