EY675056

Overview
NameEY675056
Unique NameEY675056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675056_ssr177 microsatellite EY675056_ssr177:177..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G+VYRE+ SSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGF+    V+ +SF
Sbjct:   96 LEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSF 165
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 43/67 (64.18%), Postives = 58/67 (86.57%), Query Frame = 2 
Query:  440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            G+VYRE+H SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGF+    V+ ISF
Sbjct:  108 GFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISF 174

HSP 2 Score: 70.8626 bits (172), Expect = 1.333e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP GL+KFETLSYLP +S+E L KE  YLLR+GW+PC
Sbjct:   59 CMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPC 100
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            L+ G+VYREH+ S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGF+    V+ ISF  +  P
Sbjct:  101 LEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176

HSP 2 Score: 71.2478 bits (173), Expect = 1.021e-11
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPC
Sbjct:   55 CMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPC 96
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            + G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGF+    V+ ISF  +  P
Sbjct:  104 EHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPP 178

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PC
Sbjct:   57 CMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            + G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGF+    V+ ISF  +  P
Sbjct:  104 EHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPP 178

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+PC
Sbjct:   57 CMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            ++G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGF+ +  V+ ISF
Sbjct:   99 KEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 167

HSP 2 Score: 73.559 bits (179), Expect = 2.057e-12
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC
Sbjct:   53 CMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPC 94
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.842e-23
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGF+    V+ ISF
Sbjct:  105 EHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 73.559 bits (179), Expect = 2.057e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PC
Sbjct:   58 CMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPC 99
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.285e-22
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGF+    V+ ISF
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 172

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PC
Sbjct:   57 CMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPC 98
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.679e-22
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGF+    V+ ISF
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 172
[Close]
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.679e-22
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 2 
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            + G+VYREH SSPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGF+    V+ ISF
Sbjct:  104 EHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISF 172

HSP 2 Score: 69.707 bits (169), Expect = 2.970e-11
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP  +KK+ETLSYLP LS E LL EI YLL++GW+PC
Sbjct:   57 CMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPC 98
The following BLAST results are available for this feature:
BLAST of EY675056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RBS_FLATR9.842e-2364.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA9.842e-2364.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_SOYBN9.842e-2361.84Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_PETHY9.842e-2361.33Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY9.842e-2361.33Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_LEMGI9.842e-2366.67Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS0_SOLTU9.842e-2366.67Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS2A_SOLLC1.285e-2268.12Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_TOBAC1.679e-2266.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_STELP1.679e-2268.12Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675056 ID=EY675056; Name=EY675056; organism=Citrus sinensis; type=EST; length=992bp
TTTATTAATTTTCCTGTGAGCTTGTATGTTACATGGTGTGGCCACCAACT
GGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGA
AGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCT
GCTTGGAATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTC
TGTCTCTCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCT
TTAGGAGAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCAT
TCAATATCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTT
GGGTTAAGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTT
TTTTTTTGTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAACTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAG
GAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCTTTCGTCCGAATTAT
CGGATTTGAACAACAAGCGCCAGTGGAGTGGATCAGTTTTCCTTGCTGGC
CAGCCCCCAGGCGTCCAAGGTTCCCAATTTAATTGTGGTAACCCCCCAGG
CCATATTGGTTGATTATTATTATGGGTAACCCCCCAAAAAGGATCTTTCA
AATCATGGGGGGTTCGGGTTTGGGTTTAATTTGTGAATTAAGGGCGGGGT
TGGCGGCGGGCCCAAAACTTTTTTGGGTTTTCCCCCCCCACCTTGGGGTT
TTTTTTTTTTTTTTTTTATTTTTTTAAAAAAATTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCGGCCCC
CCCCCCTAAGGAGGGAATAACAAACCACGCTCTTTACAACGT
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