EY675056

Overview
NameEY675056
Unique NameEY675056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675056_ssr177 microsatellite EY675056_ssr177:177..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.865e-15
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  437 KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFEQQAPVEWISF 640
            +G V RE  + PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GF+    V+  SF
Sbjct:  105 QGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASF 173          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.430e-13
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 2
Query:  467 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ F+    V+ + F
Sbjct:   92 SAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGF 149          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  476 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ F+ Q  V+ + F
Sbjct:  112 YYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGF 166          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  476 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ F+ Q  V+ + F
Sbjct:  112 YYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGF 166          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.617e-11
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 2
Query:  476 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ F+    V+   F
Sbjct:  109 YQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
The following BLAST results are available for this feature:
BLAST of EY675056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RBS_MARPA9.865e-1552.17Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CHLMO2.430e-1351.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE5.985e-1250.91Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE5.985e-1250.91Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACEAT6.617e-1149.09Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675056 ID=EY675056; Name=EY675056; organism=Citrus sinensis; type=EST; length=992bp
TTTATTAATTTTCCTGTGAGCTTGTATGTTACATGGTGTGGCCACCAACT
GGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGA
AGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCT
GCTTGGAATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTC
TGTCTCTCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCT
TTAGGAGAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCAT
TCAATATCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTT
GGGTTAAGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTT
TTTTTTTGTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAACTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAG
GAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCTTTCGTCCGAATTAT
CGGATTTGAACAACAAGCGCCAGTGGAGTGGATCAGTTTTCCTTGCTGGC
CAGCCCCCAGGCGTCCAAGGTTCCCAATTTAATTGTGGTAACCCCCCAGG
CCATATTGGTTGATTATTATTATGGGTAACCCCCCAAAAAGGATCTTTCA
AATCATGGGGGGTTCGGGTTTGGGTTTAATTTGTGAATTAAGGGCGGGGT
TGGCGGCGGGCCCAAAACTTTTTTGGGTTTTCCCCCCCCACCTTGGGGTT
TTTTTTTTTTTTTTTTTATTTTTTTAAAAAAATTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCGGCCCC
CCCCCCTAAGGAGGGAATAACAAACCACGCTCTTTACAACGT
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