EY675044

Overview
NameEY675044
Unique NameEY675044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.091e-20
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  110 RLMRDFKRLQQDPPAGIS---------GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 529
            R+ ++ K L  DPP G S         G+   +     +A I GP+DT +  G F L +Q  E YP +PP V F + ++HPNI   G ICLDIL    +  W P  +++ +LTS++ LL +PNP+     E +R +  N++ ++ + RE+ E+
Sbjct:   10 RMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEK 162          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.658e-20
Identity = 48/149 (32.21%), Postives = 87/149 (58.39%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 529
            M++P+K+R M   K +  D          ++++ ++     GP D+ + GG +K+ ++  E YP K P+V FV++++HPN+  + G++CLD++   WSP++D+  +  S +  LL  PNP+ P N EAA L   ++  Y  +V+E  E+
Sbjct:    1 MASPSKRREMDMMKLMMSDYKVDTV----NDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEK 145          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.945e-20
Identity = 49/149 (32.89%), Postives = 87/149 (58.39%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 529
            MS+P+K+R M   K +  D    +     ++ +  +     GP D+ ++GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA L   ++  Y +RV+E  E+
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVEMI----NDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEK 145          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.945e-20
Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 529
            MS+P+K+R M   K +  D              + +N    GP D+ + GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA L   ++  Y +RV+E  E+
Sbjct:    1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFN----GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEK 145          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.945e-20
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  116 MRDFKRLQQD--------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 487
            M DF R+Q++          +GI   P+ +N+      I GP  TP++GGTF++ +   + YP +PP ++F ++++HPNI +  G+ICLDIL++QWSP   +   L SIQ+LL  P P  P ++  A  + +N
Sbjct:    1 MIDFSRIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKN 133          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.355e-19
Identity = 50/149 (33.56%), Postives = 83/149 (55.70%), Query Frame = 2
Query:   89 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 529
            MS+P+K+R M   K +  D    +         + ++    GP D+ + GG +K+ ++ TE YP K P++ F ++++HPN+    GS+CLD++   WSP++D+  I    +  LL  PNP+ P N EAA L   +K  Y  +V+E  E+
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFH----GPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCER 145          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.770e-19
Identity = 42/122 (34.43%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  209 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAE*KSNESTG 568
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++     EY ++++E +++  T E    +  G
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEG 160          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.770e-19
Identity = 42/122 (34.43%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  209 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAE*KSNESTG 568
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++     EY ++++E +++  T E    +  G
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEG 160          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.770e-19
Identity = 42/122 (34.43%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  209 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAE*KSNESTG 568
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++     EY ++++E +++  T E    +  G
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEG 160          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.770e-19
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 2
Query:  101 AKKRLMRDFKRLQQDPPAGI----SGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            A+ RL RD   L   P   +    S    D +      VI  PD+  ++ G+    L F E YP +PP V  + ++FHPNI   G++CL+IL+  WSP  D+ +I+T +  L  +PNPN P N +AA+L  E ++E+   VR
Sbjct:   28 ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
The following BLAST results are available for this feature:
BLAST of EY675044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC37_ARATH2.091e-2034.64Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC6_ARATH4.658e-2032.21Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC5_ARATH7.945e-2032.89Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH7.945e-2033.56Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC27_ARATH7.945e-2036.84Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC4_WHEAT1.355e-1933.56Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBE2H_MOUSE1.770e-1934.43Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN1.770e-1934.43Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN1.770e-1934.43Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC12_YEAST1.770e-1936.62NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675044 ID=EY675044; Name=EY675044; organism=Citrus sinensis; type=EST; length=1005bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTTGCAGCT
ATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCCC
TGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTACA
ACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGAATAAAAG
TCCAATGAAAGCACCGGCCGGTTATGCTGTAAAAATAAAAGATGAAACCT
GGGGGGCTGGGTGTGGCTGGGTTTGTTCAATAATAATGTAACCCCGAAAC
CAATCGGATTTTCAGGGGGTTTGGGTTATTAAAAAATCCCTCCGAATTTT
TTCCCCCCAAAAAGCTCTGGGGTGAACCCCCTGGGTAAATTTCCTCAAAA
TTTCCCCTTTCTTTTTCACCTCCTTTTCAGGGAACTTGGTAATTTTATCC
GGGACCTTTTTGGAAAGGGGGGTATTTTTGGCGGGCGGGGAAAACAGGGG
GATGGTGTTCTTTAAAAAACACAACCCCCAAGAAGAGAACCTCTTTTTTT
TTTTTTGGGGAAATTTTTTTTTTTACCGGGAATTTTTTTGGGGGGGGGTG
TTGGGGGAAGGGGGGCCGCCAAAAAAAATAAAAAAACAAAAAAAAAAAAT
AAAGA
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