EY675044

Overview
NameEY675044
Unique NameEY675044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.436e-18
Identity = 47/145 (32.41%), Postives = 85/145 (58.62%), Query Frame = 2
Query:   80 NATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            NA+  +PA+ R+ +D   L+   P+ +S +  D   +    +   PD+  + GG FK  +Q  ++YP+ PP V+ +++++HPNI  +G++CL+IL+  W+P+ ++ +IL  +Q L   PN   P N EAA    ++ + +  RVR
Sbjct:   17 NASGISPAQIRIQKDVTDLEI--PSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.712e-18
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  113 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            L RDF  L+++   GI+  P   ++M W   I G  ++ W G  F+LT+ FT +Y   PP V+F++  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y   +R
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.268e-17
Identity = 42/141 (29.79%), Postives = 78/141 (55.32%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            ++ A+ R+ +D   L       I  +  D+  +L   ++  PD+  + GG F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   27 ASAAQLRIQKDINELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.268e-17
Identity = 42/141 (29.79%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  101 AKKRLMRDFKRLQQD-PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 517
            A KR+ ++ + L ++ PP     +  D N+++W+ ++  PD  P+    F++ + F  +YP KPPT+RF ++++HPN+  DG +CL ++ N+ W P      +L ++  L+  PN   P   E A L ++N   + ++  E
Sbjct:    3 ASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEE 142          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.657e-17
Identity = 42/115 (36.52%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  176 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 517
            D NI LW   I GP+++ ++   F+L ++ + DYP   P V+F++ + H N+   G ICL+IL+   W+   ++ +I+ SI  LL  PNP  P NSE A L+  +K  Y++++R+
Sbjct:   33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRD 147          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.657e-17
Identity = 42/141 (29.79%), Postives = 78/141 (55.32%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            ++ A+ R+ +D   L       I  +  D+  +L   ++  PD+  + GG F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   27 ASAAQLRIQKDITELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.164e-17
Identity = 42/141 (29.79%), Postives = 78/141 (55.32%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   27 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.164e-17
Identity = 42/141 (29.79%), Postives = 78/141 (55.32%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   27 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.164e-17
Identity = 42/141 (29.79%), Postives = 78/141 (55.32%), Query Frame = 2
Query:   92 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 514
            ++ A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   27 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of EY675044 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.826e-17
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  176 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIV 523
            ++N+  +     GP +TP+ GG +K+ ++   +YP K P++ FV+R+FHPNI    GS+CLD++   WSP++D+  I    +  LL  PN + P N EAA L       Y  +VR+ +
Sbjct:   26 NDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYI 143          
The following BLAST results are available for this feature:
BLAST of EY675044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC12_SCHPO7.436e-1832.41NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2U_HUMAN9.712e-1835.04Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC12_XENTR1.268e-1729.79NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UB2L6_MOUSE1.268e-1729.79Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UBC1_MIMIV1.657e-1736.52Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC12_XENLA1.657e-1729.79NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE2.164e-1729.79NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN2.164e-1729.79NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN2.164e-1729.79NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC8_SCHPO2.826e-1736.44Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-C03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675044 ID=EY675044; Name=EY675044; organism=Citrus sinensis; type=EST; length=1005bp
TTCTTTCTCTAGAAGCTTCTCCTCTCATTCTCCCCCCTTACCCCCTCTGC
AAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCCACTATGTCAACACCG
GCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCAAGATCCACC
CGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGTTATGGAACG
CCGTTATTTTTGGGCCTGATGATACTCCCTGGGACGGAGGTACGTTCAAG
TTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAACAGTTCG
GTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGAAGTATCT
GCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTTGCAGCT
ATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAAACTCCCC
TGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGAGAGTACA
ACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGAATAAAAG
TCCAATGAAAGCACCGGCCGGTTATGCTGTAAAAATAAAAGATGAAACCT
GGGGGGCTGGGTGTGGCTGGGTTTGTTCAATAATAATGTAACCCCGAAAC
CAATCGGATTTTCAGGGGGTTTGGGTTATTAAAAAATCCCTCCGAATTTT
TTCCCCCCAAAAAGCTCTGGGGTGAACCCCCTGGGTAAATTTCCTCAAAA
TTTCCCCTTTCTTTTTCACCTCCTTTTCAGGGAACTTGGTAATTTTATCC
GGGACCTTTTTGGAAAGGGGGGTATTTTTGGCGGGCGGGGAAAACAGGGG
GATGGTGTTCTTTAAAAAACACAACCCCCAAGAAGAGAACCTCTTTTTTT
TTTTTTGGGGAAATTTTTTTTTTTACCGGGAATTTTTTTGGGGGGGGGTG
TTGGGGGAAGGGGGGCCGCCAAAAAAAATAAAAAAACAAAAAAAAAAAAT
AAAGA
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