EY675042

Overview
NameEY675042
Unique NameEY675042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1078
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_PHANO (Mediator of RNA polymerase II transcription subunit 31 OS=Phaeosphaeria nodorum GN=SOH1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 2.017e-16
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   75 GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYP-HCLYFLELLQNANFRNAMAHP--ANK 317
            G  RF LELEFVQCLANP Y++YLA  +YF+   F+ YL YLQY+  P+YIKF+ +P   L  LELLQ   FR  +  P  ANK
Sbjct:   17 GFTRFELELEFVQCLANPVYLNYLATQKYFDKPEFVAYLDYLQYFAEPKYIKFLHHPGPTLRALELLQQERFRQDIITPGLANK 100          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_NEUCR (Mediator of RNA polymerase II transcription subunit 31 OS=Neurospora crassa GN=soh-1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.494e-16
Identity = 49/107 (45.79%), Postives = 60/107 (56.07%), Query Frame = 3
Query:    6 AKDP----EEASDAPSSPKKVHKDPD-DGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYP-HCLYFLELLQNANFRNAMAHP 308
            A DP      A + P+ P     +P   G  RF LELEFVQ L NP Y+++LA  +   + AFI YL YLQYW RP Y+K+I YP   L  LELLQ   FR  +  P
Sbjct:    2 ASDPMSVNSSAREPPAPPGSGADEPKYGGYTRFELELEFVQALGNPLYLNHLASRKLLSNPAFIAYLDYLQYWSRPPYLKYITYPGPTLKNLELLQQEKFRQDIISP 108          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_USTMA (Mediator of RNA polymerase II transcription subunit 31 OS=Ustilago maydis GN=SOH1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.087e-13
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 3
Query:    6 AKDPEEASDAPSSPKKVHKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN-ANFRNAMAHPANKELAHRQQFFFWKNYKN 365
            A DP +++ A  SP +  +     +  F  +LEF+  LANP Y+++LA +      +F  YLKYL Y++ P+Y+K++ YP  L+FL+LLQN   FR A   PA       +Q   W  +++
Sbjct:    8 ANDPIDSTLA--SPSRDEQRRQANQAAFSRDLEFLSSLANPYYLNHLALSGALSSPSFKRYLKYLDYFRHPKYVKYLHYPQALHFLDLLQNEEEFRLACRDPAFAGEVMAKQIGHWATWRD 126          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_ASHGO (Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya gossypii GN=SOH1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.308e-12
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   21 EASDAPSSPKKVHKDPDDGRQ---RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN 278
            ++S+ P  P        +G Q   RF +ELEFVQ LAN  Y+ +L  Q++ ++D  F  YLKYL+YW  P Y +FI+YP+CL+ L+LL +
Sbjct:    4 KSSEPPFEPSS------EGEQLPSRFEVELEFVQSLANIPYVTFLLTQHQIWQDPRFKAYLKYLEYWCEPPYTQFIVYPNCLFVLKLLNS 87          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_YEAST (Mediator of RNA polymerase II transcription subunit 31 OS=Saccharomyces cerevisiae GN=SOH1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.352e-11
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   30 DAPSSPKKVHKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 272
            +AP++P     D +    RF +ELEF+Q LAN  Y+ YL  Q + ++   F  YLKYL+YW  P Y + I+YP+CL+ L+LL
Sbjct:    7 NAPATPSS---DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLL 85          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_KLULA (Mediator of RNA polymerase II transcription subunit 31 OS=Kluyveromyces lactis GN=SOH1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.684e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3
Query:   84 RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 272
            RF +ELEFVQ LAN  Y+ YL  Q + ++D  F  YLKYL+YW  PEY + I+YP+ L+ L+LL
Sbjct:   19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFVLKLL 82          
The following BLAST results are available for this feature:
BLAST of EY675042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_PHANO2.017e-1654.76Mediator of RNA polymerase II transcription subuni... [more]
MED31_NEUCR4.494e-1645.79Mediator of RNA polymerase II transcription subuni... [more]
MED31_USTMA2.087e-1335.54Mediator of RNA polymerase II transcription subuni... [more]
MED31_ASHGO2.308e-1243.33Mediator of RNA polymerase II transcription subuni... [more]
MED31_YEAST4.352e-1143.90Mediator of RNA polymerase II transcription subuni... [more]
MED31_KLULA5.684e-1153.13Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-C01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675042 ID=EY675042; Name=EY675042; organism=Citrus sinensis; type=EST; length=1078bp
CCGCTGCCAAGGACCCCGAAGAAGCATCCGATGCCCCATCCTCGCCAAAG
AAGGTGCATAAAGATCCAGACGACGGGAGACAACGCTTTTTGCTTGAACT
GGAATTCGTTCAATGTCTTGCTAATCCCACTTACATTCACTATTTGGCTC
AGAATCGCTATTTTGAAGACGAGGCTTTCATTGGTTACTTGAAATATCTT
CAGTACTGGCAACGGCCGGAGTACATTAAATTTATAATGTATCCACATTG
CCTCTATTTTCTTGAACTTCTACAAAATGCAAACTTCCGCAATGCTATGG
CACATCCTGCCAACAAGGAGTTGGCACATAGGCAGCAATTCTTTTTCTGG
AAGAACTATAAAAACAATCAACTAAGGCACATTTTACCAAGGCCTCTTCC
TGAACCTGCTGAGGCTCCACCACCCTGCTGCTGCTCCACCTCTGCCACCT
GGCCCAACCTGTGCCGACTCCTGTGACAGCTGCTTCAGGGCCCACCCTTT
CTCCTATGCAAGTAATGGAATTTCCCCCAGGATCAGACTCTGAATGAAAA
CAAGATATGAATGAGTACCAACTTTGATTAAAAAAAAAAGAAAAAAGATG
GGTGAATTGGCGAAAAATTCCTGGACCTTCAAACTAAGAAAAAATGCTTA
TTTGAAAAAAGGCAGGTTTATAAGGGGTATTTAAATCCAAGCAGAGTAAG
GGGGAAAATACTCGGGAAGGATCAACACATGTATCAGGAACCGGAGAGAA
GTTCAAATTGAGAGGGGGGGGAGGGCACAACATAGATAAAATAATGGTAC
AACGAACCCAATCATCCTCGCTTTTCAACGGCGGCGCCGTACTGATTAGG
AGACATACGGCTGGGTAGGAAAGCTTACAAATGGTCAGGGGACACACACG
AAGTATGGAAAACGTAGGTGGATAAATCACGGGCTATGAGGGGCAAGAGA
AGAAGCCACGAGGGGGAGGAGGAGGGGCAGGCTGGGGCAATGCCCTCGCA
CCCGACGATACACGGGCGACCAGTAGTACGCAGATGACGAAAAAGAGAGA
TAGAACGGAGGATNCGGAACCGGAGTAA
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