EY675023 | Citrus Genome Database

Overview


Name	EY675023
Unique Name	EY675023
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1024

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.167e-11
Identity = 42/154 (27.27%), Postives = 78/154 (50.65%), Query Frame = 3

Query:   15 LLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKS 476
            ++E   SG   +L+  K +DL+ MY+L+ ++P GL+ +      ++  +G  LV +       +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKK G + L+++ +E  L+K+
Sbjct:  276 IVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALVSE-------EGEGKNPVD---YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKK-GVKGLTEQEVESILDKA 415

HSP 2 Score: 26.5646 bits (57), Expect = 2.167e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRL 552
            ++ +KD+F  +Y++ LARRL
Sbjct:  421 FMQEKDVFERYYKQHLARRL 440

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.167e-11
Identity = 42/154 (27.27%), Postives = 78/154 (50.65%), Query Frame = 3

Query:   15 LLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKS 476
            ++E   SG   +L+  K +DL+ MY+L+ ++P GL+ +      ++  +G  LV +       +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKK G + L+++ +E  L+K+
Sbjct:  276 IVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALVSE-------EGEGKNPVD---YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKK-GVKGLTEQEVESILDKA 415

HSP 2 Score: 26.5646 bits (57), Expect = 2.167e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRL 552
            ++ +KD+F  +Y++ LARRL
Sbjct:  421 FMQEKDVFERYYKQHLARRL 440

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.167e-11
Identity = 42/154 (27.27%), Postives = 78/154 (50.65%), Query Frame = 3

Query:   15 LLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKS 476
            ++E   SG   +L+  K +DL+ MY+L+ ++P GL+ +      ++  +G  LV +       +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKK G + L+++ +E  L+K+
Sbjct:  276 IVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSLYLREQGKALVSE-------EGEGKNPVD---YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKK-GVKGLTEQEVESILDKA 415

HSP 2 Score: 26.5646 bits (57), Expect = 2.167e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRL 552
            ++ +KD+F  +Y++ LARRL
Sbjct:  421 FMQEKDVFERYYKQHLARRL 440

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.168e-11
Identity = 41/144 (28.47%), Postives = 68/144 (47.22%), Query Frame = 3

Query:   48 LLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV----GGSSSSELLATFCDNILKKGGNEKLSDEAIEETL 467
            +L ++  +D+ RMYRL  + P GL+P+   F++ +   G   V +       Q G    V  +  +  ++  +    E V   F   T F K+L  AF    N+ V      S S ELLA + D+IL+K  N+ +  + +E+ L
Sbjct:  303 MLDQNCSEDIIRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAVAK----IVPQVGGEADVDPKEYMEMLLSTYKASKELVNTAFHGDTDFTKSLDTAFRELVNRNVVCQRSSSRSPELLAKYADSILRK-SNKNVDIDDVEDCL 441

HSP 2 Score: 30.4166 bits (67), Expect = 2.168e-11
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRL 552
            Y+ DKD+F  FY K LA+RL
Sbjct:  450 YVEDKDVFQNFYTKLLAKRL 469

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 2.813e-11
Identity = 42/154 (27.27%), Postives = 77/154 (50.00%), Query Frame = 3

Query:   15 LLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKS 476
            ++E   SG   +L+  K +DL  MY+L+ ++P GL+ +      ++  +G  LV +       +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKK G + L+++ +E  L+K+
Sbjct:  276 IVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSE-------EGEGKNPVD---YIQGLLDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKK-GVKGLTEQEVETILDKA 415

HSP 2 Score: 26.5646 bits (57), Expect = 2.813e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRL 552
            ++ +KD+F  +Y++ LARRL
Sbjct:  421 FMQEKDVFERYYKQHLARRL 440

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.739e-11
Identity = 42/154 (27.27%), Postives = 78/154 (50.65%), Query Frame = 3

Query:   15 LLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKS 476
            ++E   SG   +L+  K +DL+ MY+L+ ++P GL+ +      ++  +G  LV +       +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKK G + L+++ +E  L+K+
Sbjct:  276 IVEMENSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSCYLREQGKALVSE-------EGEGKNPVD---YIQGLLDLKSRFDRFLQESFNNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKK-GVKGLTEQEVETILDKA 415

HSP 2 Score: 26.5646 bits (57), Expect = 4.739e-11
Identity = 9/20 (45.00%), Postives = 16/20 (80.00%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRL 552
            ++ +KD+F  +Y++ LARRL
Sbjct:  421 FMQEKDVFERYYKQHLARRL 440

[Close]

BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 7.973e-11
Identity = 40/147 (27.21%), Postives = 77/147 (52.38%), Query Frame = 3

Query:   36 GCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKS 476
            G  A++  D+++DL ++Y+L + + + ++ +   ++ +I   G  ++   E  AT             LI+ +++  D+    ++  F  + L   ALKE+FE F N     +  +EL+A F D+ LK GG +++S+E +E  L KS
Sbjct:  316 GFNAMVNGDRLEDLGKLYQLLNSVGE-IKKIKESWQSYIKQTGIQMLNDKEKEAT-------------LIQDLLDYKDRLDRILSQSFSKNELLTYALKESFEYFIN--TKQNKPAELVARFIDSKLKVGG-KRMSEEELETVLNKS 445

HSP 2 Score: 28.4906 bits (62), Expect = 7.973e-11
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  493 YISDKDLFAEFYRKKLARRLAFD 561
            YI  KD+F  FY++ L++RL  D
Sbjct:  451 YIQGKDVFEAFYKQDLSKRLLLD 473

The following BLAST results are available for this feature:

BLAST of EY675023 vs. ExPASy Swiss-Prot

BLAST of EY675023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17


Match Name	E-value	Identity	Description
CUL3_XENTR	2.167e-11	27.27	Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1	[more]
CUL3B_XENLA	2.167e-11	27.27	Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1	[more]
CUL3A_XENLA	2.167e-11	27.27	Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1	[more]
CUL1_SCHPO	2.168e-11	28.47	Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1...	[more]
CUL3_HUMAN	2.813e-11	27.27	Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2	[more]
CUL3_MOUSE	4.739e-11	27.27	Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1	[more]
CUL4_DICDI	7.973e-11	27.21	Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-004-H10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY675023 ID=EY675023; Name=EY675023; organism=Citrus sinensis; type=EST; length=1024bp
CCACGCGTCCGGAGCTTCTTGAGAACGCGCTGTCTGGATGCCGAGCATTG
CTTAGAGAAGATAAGGTGCAGGATCTTTCTAGGATGTATAGGCTTTATCA
TAAAATACCTAAAGGCTTGGAGCCAGTGGCTAATGTATTCAAACAGCATA
TTACTGCCGAAGGTACTGTGTTGGTACAACAGGCTGAAGATGCTGCAACA
AACCAGGGTGGAAGTTCAGGTGCTGTGCAGGAACAGGTCCTTATCAGAAA
AATAATTGAGCTGCATGACAAGTATATGGAATACGTGACTAATTGTTTCA
TAAACCACACGTTGTTCCACAAGGCTCTGAAAGAGGCTTTTGAGATATTT
TGCAATAAAGCTGTTGGTGGCAGTTCGAGTTCAGAACTGCTGGCAACTTT
TTGTGATAATATCCTAAAGAAGGGTGGAAATGAGAAACTGAGTGATGAAG
CCATTGAAGAAACTCTGGAGAAAAGTTGTTAAGCTGCTTGCATATATCAG
TGATAAAGATCTTTTTGCCGAATTCTACAGGAAGAAGCTTGCTCGTCGGC
TTGCTTTTGATTCGTAATGCTAATGATGAATCATGAAAAGAGTATTTCTC
ACCAAACCTGAAACAACATTGTGGTGGAAAAGTTTAATCCAAAAAGGGAG
GGAAGGGTTACAAATTTTACTTTGGCAAAAAAAAAAATCAAAACCGCTTT
TGAGGAAAAATTCTCCACCATAAACCCAAAAAGGGCCCCCCCCCGGGAAA
AAAAATTTTTCATTTACTGGTTCCCCATACTGGGAATTTTTGCCCAAATT
TAAAAATCCCCTCAATCTCGAAACCTTTCCCTCTCAGAAAAGGGTAAAAG
TGGTGTAAAAATTTTTTTAGGGGGGATTTTTTTTAAAAACCACAAACAAA
AAAAAACCCAAAAAAATATTTTATTTGGGGGGTATTTTTTCTCCCTTGTG
GGGGGCTCTAATGTGCGACAATAAAAAAAGGGGGGTGGGGATGGTGTTTG
AAGAAAAAAAAAAAAAAAAAATAA