EY674986

Overview
NameEY674986
Unique NameEY674986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1001
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674986 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.396e-16
Identity = 56/211 (26.54%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   26 CRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTV-LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCN-------------KAVG-----GSSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRNANDDHEKSILTKLKQ 598
            C+ +++ ++ E L  M+ L  K+P G+EP+    ++HI + G   +V  AE   T+          +  + +++ L +++ + V   F +   F  A  +A++   N             K VG      S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D +A+ + E++++  L++
Sbjct:  281 CQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDS---------EKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLRE 482          
BLAST of EY674986 vs. ExPASy Swiss-Prot
Match: CUL5_HUMAN (Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 1.396e-16
Identity = 56/211 (26.54%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   26 CRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTV-LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCN-------------KAVG-----GSSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRNANDDHEKSILTKLKQ 598
            C+ +++ ++ E L  M+ L  K+P G+EP+    ++HI + G   +V  AE   T+          +  + +++ L +++ + V   F +   F  A  +A++   N             K VG      S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D +A+ + E++++  L++
Sbjct:  281 CQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDS---------EKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLRE 482          
BLAST of EY674986 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.823e-16
Identity = 56/211 (26.54%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   26 CRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTV-LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCN-------------KAVG-----GSSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRNANDDHEKSILTKLKQ 598
            C+ +++ ++ E L  M+ L  K+P G+EP+    ++HI + G   +V  AE   T+          +  + +++ L +++ + V   F +   F  A  +A++   N             K VG      S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D +A+ + E++++  L++
Sbjct:  281 CQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDS---------EKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLAIYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLRE 482          
BLAST of EY674986 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.381e-16
Identity = 56/211 (26.54%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   26 CRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTV-LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCN-------------KAVG-----GSSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRNANDDHEKSILTKLKQ 598
            C+ +++ ++ E L  M+ L  K+P G+EP+    ++HI + G   +V  AE   T+          +  + +++ L +++ + V   F +   F  A  +A++   N             K VG      S   ELLA +CD +L+K   ++KL+ E IE  L++V+ +L Y+ +KD+F  +++  L RRL+ D +A+ + E++++  L++
Sbjct:  281 CQGMIKRNETEKLHLMFSLMDKVPGGIEPMLKDLEEHIISAGLADMVAAAETITTDS---------EKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKLELPLKQKGVGLKTQPESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLRE 482          
BLAST of EY674986 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.911e-14
Identity = 40/142 (28.17%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  215 QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGS--SSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRNANDDHEKSILTKLKQQCGEQFTSKMGG 634
            ++  L+++++  H      V   F++      A+++AFE F N A G    + + L+A + D +L+ G  +    + ++E   +++ L  YI+ KD+F  +Y+  +A+RLL +++A+  +E  +L  LK+ CG QFT  + G
Sbjct:  327 KDDTLVQELLSFHKFLQVVVDESFLHDETLSYAMRKAFETFINGAKGSQREAPARLIAKYIDYLLRVG-EQASGGKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQNELMLLDMLKKTCGSQFTHSLEG 467          
The following BLAST results are available for this feature:
BLAST of EY674986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CUL5_MOUSE1.396e-1626.54Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL5_HUMAN1.396e-1626.54Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4[more]
CUL5_PONAB1.823e-1626.54Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]
CUL5_RAT2.381e-1626.54Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CUL4_SCHPO2.911e-1428.17Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-D06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674986 ID=EY674986; Name=EY674986; organism=Citrus sinensis; type=EST; length=1001bp
GCTTCTTGAGAAGGAGCAGTCTGGATGCCGAGCATTGCTTAGAGAAGATA
AGGTGGAGGATCTTTCTAGGATGTATAGGCTTTATCATAAAATACCTAAA
GGCTTGGAGCCAGTGGCTAATGTATTCAAACAGCATATTACTGCCGAAGG
TACTGTGTTGGTACAACAGGCTGAAGATGCTGCAACAAACCAGGGTGGAA
GTTCAGGTGCTGTGCAGGAACAGGTCCTTATCAGAAAAATAATTGAGCTG
CATGACAAGTATATGGAATACGTGACTAATTGTTTCATAAACCACACGTT
GTTCCACAAGGCTCTGAAAGAGGCTTTTGAGATATTTTGCAATAAAGCTG
TTGGTGGCAGTTCGAGTTCAGAACTGCTGGCAACTTTTTGTGATAATATC
CTAAAGAAGGGTGGAAATGAGAAACTGAGTGATGAAGCCATTGAAGAAAC
TCTGGAGAAGGTTGTTAAGCTGCTTGCATATATCAGTGATAAAGATCTTT
TTGCCGAATTCTACAGGAAGAAGCTTGCTCGTCGGCTGCTTTTTGATCGT
AATGCTAATGATGATCATGAAAAGAGTATTCTCACAAAGCTGAAACAGCA
ATGTGGTGAACAGTTTACATCGAAGATGGGAGGGAATGGGTTACAAATTT
GACTTTGGCAAGAAAAAAATCAAACCCACCTTTAAAGAATACCTCCCCAA
ATAACCAAAATGCCCACCCTGGAAAAAAATTTTTTCATTTACTGTTTCCC
CCAAAGGGGTTTTTGGCCCAATTTATAAAATCCCCCCATTTTTAAACCCT
TCCTTTCGGAAAAAGGTTAAAAGGGGGTAAAAAATTTTTTAAGGGGGATT
TTTTTAAAAAACCCCAAAAAAAAAAAACCCAAAAAAAAACTTTTTACTTG
GGGTTTTTTTTTCCCTTTTGGGGGGTCCAAAAGGGACAAACAAAAAAAAA
GGGGGGGAAAAGTGTTTTTGAGAAAACAAACAAAAAAAAAAAATAATTTT
A
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