EY674965 | Citrus Genome Database

Overview


Name	EY674965
Unique Name	EY674965
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	992

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.963e-41
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151

HSP 2 Score: 21.557 bits (44), Expect = 1.963e-41
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA 207

HSP 3 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YRIAGGPL
Sbjct:  134 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPL 183

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.963e-41
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151

HSP 2 Score: 21.557 bits (44), Expect = 1.963e-41
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA 207

HSP 3 Score: 83.1889 bits (204), Expect = 2.596e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQV+LMG    YRIAGGPL
Sbjct:  134 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPL 183

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.109e-41
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150

HSP 2 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AG PL
Sbjct:  133 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPL 182

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.754e-41
Identity = 79/93 (84.95%), Postives = 81/93 (87.10%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEPK 280
            LGPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P+
Sbjct:   71 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQ 163

HSP 2 Score: 80.8777 bits (198), Expect = 1.288e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLG+P LIHAQSILAIWACQV+LMG    YR+AGGPL
Sbjct:  145 KAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPL 194

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.754e-41
Identity = 79/93 (84.95%), Postives = 81/93 (87.10%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEPK 280
            LGPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P+
Sbjct:   71 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQ 163

HSP 2 Score: 80.8777 bits (198), Expect = 1.288e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLG+P LIHAQSILAIWACQV+LMG    YR+AGGPL
Sbjct:  145 KAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPL 194

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.698e-41
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK G     +G    LG P
Sbjct:   60 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNP 151

HSP 2 Score: 78.5666 bits (192), Expect = 6.394e-14
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 3

Query:  231 GAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            G+ IFS+G LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AG PL
Sbjct:  136 GSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPL 183

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.136e-41
Identity = 78/92 (84.78%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG      G    LG P
Sbjct:   59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150

HSP 2 Score: 83.1889 bits (204), Expect = 2.596e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  133 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 182

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.376e-41
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:   56 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 147

HSP 2 Score: 21.557 bits (44), Expect = 7.376e-41
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  167 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 203

HSP 3 Score: 79.7221 bits (195), Expect = 2.870e-14
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSLIHAQSILAIWA QV+LMG    YRIAGGPL
Sbjct:  130 KAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 179

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.376e-41
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:   55 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 146

HSP 2 Score: 21.557 bits (44), Expect = 7.376e-41
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  166 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA 202

HSP 3 Score: 83.9593 bits (206), Expect = 1.522e-15
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSLIHAQSILAIWACQVVLMG    YRIAGGPL
Sbjct:  129 KAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL 178

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.379e-41
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:   48 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 139

HSP 2 Score: 21.557 bits (44), Expect = 7.379e-41
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  159 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 195

HSP 3 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YRIAGGPL
Sbjct:  122 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPL 171

The following BLAST results are available for this feature:

BLAST of EY674965 vs. ExPASy Swiss-Prot

BLAST of EY674965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB2G_SOLLC	1.963e-41	85.87	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2A_SPIOL	1.963e-41	85.87	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB25_NICPL	2.109e-41	85.87	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB2A_PYRPY	2.754e-41	84.95	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2A_PINSY	2.754e-41	84.95	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB23_NICPL	4.698e-41	84.78	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB24_PETSP	6.136e-41	84.78	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB23_SOYBN	7.376e-41	84.78	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]
CB21_MAIZE	7.376e-41	84.78	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB21_CUCSA	7.379e-41	84.78	Chlorophyll a-b binding protein of LHCII type I, c...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-004-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY674965 ID=EY674965; Name=EY674965; organism=Citrus sinensis; type=EST; length=992bp
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAAAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGGCCCATATCTTCAGCGA
GGGCAGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAAAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGGACCCATTGAAGG
TACAGAATTGCTGGAGGGCCGCTCCGGAGAAGAGAAAGAACCAATGTACG
CCAAAAGACAACTTTGATCCAATGGGTTAGGCAGAAGACCGAGAAGTTTA
TGGTAGAGCCCAAGGATAAGAGAAACAAGAAAAGGATAGATGGGGAAGTG
AAGACGTGGTGTTGGGTATCAGTCCTTTAAAGGGAATTTAAAAAAGGAGA
GGGGAACAATAAAAAAAAACTTGGGATAAACACGTTGGGAAAGGATCGTA
AGGAGAAGAAGGCCTTGAGAACGAAAGAACCTAAAAAATGGCCCACGAGG
AAAAAGAGAAAACCAGGAGAGAATAAAAAGAAAAAGACAACTTTTGGGGG
ATGAAGACGAAACACAAGCAGCAAGAAGTAGAGAGGGGAAAGAGCGCAGG
TGGGGACAGGGTGAAGACTTGGATAGAGAGACTCCTACATAATTAAGTGG
AAAAAATGGACAAATATTAAGAAAGTAAATAGATCACAAAGATAGGATGA
ACAATCAGGTAATGATAAAATATGAGAAAACACCGGAAGTAGCTAGGAGT
GGAAGCATGCAAAAAAGAGGGCGATATATTGGCAGAATGAAGAATGTAGA
GAAATAATGTGAATAAAAAAGAGGAATTGTAGTGAGTGGAGA