EY674965 | Citrus Genome Database

Overview


Name	EY674965
Unique Name	EY674965
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	992

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.632e-40
Identity = 78/92 (84.78%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGP SGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   54 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 145

HSP 2 Score: 21.557 bits (44), Expect = 1.632e-40
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  165 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA 201

HSP 3 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSLIHAQSILAIWA QVVLMG    YRIAGGPL
Sbjct:  128 KAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL 177

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.785e-40
Identity = 78/92 (84.78%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGP SGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149

HSP 2 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSLIHAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  132 KAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.785e-40
Identity = 78/92 (84.78%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTA LSADP+TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   60 LGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151

HSP 2 Score: 83.1889 bits (204), Expect = 2.596e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  134 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 183

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.785e-40
Identity = 87/150 (58.00%), Postives = 97/150 (64.67%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEPKPDPRSKXXXXXXXXXXXXXXXXKVQNCWRAAPEKRKNQCTPKDNFDPMG*AEDREVY 451
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG    Q G    LG P     ++                +          +  +Q  P   FDP+G AED E +
Sbjct:   57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNL-VHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.785e-40
Identity = 78/92 (84.78%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGP SGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149

HSP 2 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSLIHAQSILAIWA QVVLMG    YRIAGGPL
Sbjct:  132 KAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.045e-40
Identity = 78/92 (84.78%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   57 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 148

HSP 2 Score: 77.7962 bits (190), Expect = 1.091e-13
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSIL+IWA QV+LMG    YR+AGGPL
Sbjct:  131 KAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPL 180

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.045e-40
Identity = 77/92 (83.70%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG      G    LG P
Sbjct:   60 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNP 151

HSP 2 Score: 82.0333 bits (201), Expect = 5.783e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQV+LMG    YR+AGGPL
Sbjct:  134 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPL 183

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.608e-40
Identity = 76/92 (82.61%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFP DYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAG      G    LG P
Sbjct:   60 LGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNP 151

HSP 2 Score: 21.557 bits (44), Expect = 3.608e-40
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  171 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEA 207

HSP 3 Score: 84.3445 bits (207), Expect = 1.165e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  134 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 183

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.714e-40
Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:   21 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 112

HSP 2 Score: 21.9422 bits (45), Expect = 4.714e-40
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  132 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEA 168

HSP 3 Score: 79.337 bits (194), Expect = 3.749e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWA QV+LMG    YRIAGGPL
Sbjct:   95 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 144

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.784e-40
Identity = 85/150 (56.67%), Postives = 94/150 (62.67%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEPKPDPRSKXXXXXXXXXXXXXXXXKVQNCWRAAPEKRKNQCTPKDNFDPMG*AEDREVY 451
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P                         +        + ++   P  +FDP+G A D E +
Sbjct:   59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 208

The following BLAST results are available for this feature:

BLAST of EY674965 vs. ExPASy Swiss-Prot

BLAST of EY674965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB22_ORYSJ	1.632e-40	84.78	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB29_MAIZE	1.785e-40	84.78	Chlorophyll a-b binding protein M9, chloroplastic ...	[more]
CB25_PETSP	1.785e-40	84.78	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB21_SILPR	1.785e-40	58.00	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB21_ORYSJ	1.785e-40	84.78	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB23_APIGR	3.045e-40	84.78	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_PETSP	3.045e-40	83.70	Chlorophyll a-b binding protein 22L, chloroplastic...	[more]
CB23_PETSP	3.608e-40	82.61	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB21_PEA	4.714e-40	83.70	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB22_ARATH	6.784e-40	56.67	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-401-004-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY674965 ID=EY674965; Name=EY674965; organism=Citrus sinensis; type=EST; length=992bp
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAAAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGGCCCATATCTTCAGCGA
GGGCAGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAAAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGGACCCATTGAAGG
TACAGAATTGCTGGAGGGCCGCTCCGGAGAAGAGAAAGAACCAATGTACG
CCAAAAGACAACTTTGATCCAATGGGTTAGGCAGAAGACCGAGAAGTTTA
TGGTAGAGCCCAAGGATAAGAGAAACAAGAAAAGGATAGATGGGGAAGTG
AAGACGTGGTGTTGGGTATCAGTCCTTTAAAGGGAATTTAAAAAAGGAGA
GGGGAACAATAAAAAAAAACTTGGGATAAACACGTTGGGAAAGGATCGTA
AGGAGAAGAAGGCCTTGAGAACGAAAGAACCTAAAAAATGGCCCACGAGG
AAAAAGAGAAAACCAGGAGAGAATAAAAAGAAAAAGACAACTTTTGGGGG
ATGAAGACGAAACACAAGCAGCAAGAAGTAGAGAGGGGAAAGAGCGCAGG
TGGGGACAGGGTGAAGACTTGGATAGAGAGACTCCTACATAATTAAGTGG
AAAAAATGGACAAATATTAAGAAAGTAAATAGATCACAAAGATAGGATGA
ACAATCAGGTAATGATAAAATATGAGAAAACACCGGAAGTAGCTAGGAGT
GGAAGCATGCAAAAAAGAGGGCGATATATTGGCAGAATGAAGAATGTAGA
GAAATAATGTGAATAAAAAAGAGGAATTGTAGTGAGTGGAGA