EY674965 | Citrus Genome Database

Overview


Name	EY674965
Unique Name	EY674965
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	992

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.784e-40
Identity = 76/92 (82.61%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG    + G    LG P
Sbjct:   59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNP 150

HSP 2 Score: 81.6481 bits (200), Expect = 7.553e-15
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IF EG LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  133 KAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 182

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.784e-40
Identity = 85/150 (56.67%), Postives = 94/150 (62.67%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEPKPDPRSKXXXXXXXXXXXXXXXXKVQNCWRAAPEKRKNQCTPKDNFDPMG*AEDREVY 451
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P                         +        + ++   P  +FDP+G A D E +
Sbjct:   59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 208

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.157e-39
Identity = 77/90 (85.56%), Postives = 78/90 (86.67%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLG 271
            LGPFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG      G    LG
Sbjct:   38 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLG 127

HSP 2 Score: 76.6406 bits (187), Expect = 2.430e-13
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGN SLIHAQSILAIWA QV+LMG    YRIAGGPL
Sbjct:  112 KAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 161

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.355e-39
Identity = 76/92 (82.61%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:   61 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 152

HSP 2 Score: 21.557 bits (44), Expect = 1.355e-39
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  172 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA 208

HSP 3 Score: 79.337 bits (194), Expect = 3.749e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWA QV+LMG    YRIAGGPL
Sbjct:  135 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 184

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.355e-39
Identity = 76/92 (82.61%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:   62 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 153

HSP 2 Score: 21.557 bits (44), Expect = 1.355e-39
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  173 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEA 209

HSP 3 Score: 79.337 bits (194), Expect = 3.749e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWA QV+LMG    YRIAGGPL
Sbjct:  136 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPL 185

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.974e-39
Identity = 77/92 (83.70%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G      G    LG P
Sbjct:   57 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNP 148

HSP 2 Score: 82.0333 bits (201), Expect = 5.783e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            ++G+ IFSEG L YLGNPSL+HAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  131 KKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 180

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 4.398e-39
Identity = 74/92 (80.43%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149

HSP 2 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNP+LIHAQSILAIWACQVVLMG    YR+ GGPL
Sbjct:  132 KAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.111e-39
Identity = 75/90 (83.33%), Postives = 77/90 (85.56%), Query Frame = 2

Query:    8 PFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            PFSGEPPSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG      G    LG P
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 90

HSP 2 Score: 21.557 bits (44), Expect = 5.111e-39
Identity = 11/37 (29.73%), Postives = 16/37 (43.24%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE  +P+Y        GL   P +
Sbjct:  110 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 146

HSP 3 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YRIAGGPL
Sbjct:   73 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPL 122

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.627e-39
Identity = 75/92 (81.52%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSG PPSYL+GEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNP 149

HSP 2 Score: 21.9422 bits (45), Expect = 6.627e-39
Identity = 11/37 (29.73%), Postives = 17/37 (45.95%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRS 447
            G +EG  +  G  GE ++P+Y        GL   P +
Sbjct:  169 GAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEA 205

HSP 3 Score: 81.6481 bits (200), Expect = 7.553e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IF+EG LDYLGNPSL+HAQSILAIWACQV+LMG    YR+AGGPL
Sbjct:  132 KAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.501e-39
Identity = 73/92 (79.35%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149

HSP 2 Score: 79.7221 bits (195), Expect = 2.870e-14
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNP+L+HAQSILAIWACQVVLMG    YR+ GGPL
Sbjct:  132 KAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPL 181

The following BLAST results are available for this feature:

BLAST of EY674965 vs. ExPASy Swiss-Prot

BLAST of EY674965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB21_PETSP	6.784e-40	82.61	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB21_ARATH	6.784e-40	56.67	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB21_SOYBN	1.157e-39	85.56	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB28_PEA	1.355e-39	82.61	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB22_PEA	1.355e-39	82.61	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB22_HORVU	1.974e-39	83.70	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_GOSHI	4.398e-39	80.43	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB22_CUCSA	5.111e-39	83.33	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB23_POLMU	6.627e-39	81.52	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB24_SOLLC	7.501e-39	79.35	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-401-004-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY674965 ID=EY674965; Name=EY674965; organism=Citrus sinensis; type=EST; length=992bp
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAAAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGGCCCATATCTTCAGCGA
GGGCAGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAAAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGGACCCATTGAAGG
TACAGAATTGCTGGAGGGCCGCTCCGGAGAAGAGAAAGAACCAATGTACG
CCAAAAGACAACTTTGATCCAATGGGTTAGGCAGAAGACCGAGAAGTTTA
TGGTAGAGCCCAAGGATAAGAGAAACAAGAAAAGGATAGATGGGGAAGTG
AAGACGTGGTGTTGGGTATCAGTCCTTTAAAGGGAATTTAAAAAAGGAGA
GGGGAACAATAAAAAAAAACTTGGGATAAACACGTTGGGAAAGGATCGTA
AGGAGAAGAAGGCCTTGAGAACGAAAGAACCTAAAAAATGGCCCACGAGG
AAAAAGAGAAAACCAGGAGAGAATAAAAAGAAAAAGACAACTTTTGGGGG
ATGAAGACGAAACACAAGCAGCAAGAAGTAGAGAGGGGAAAGAGCGCAGG
TGGGGACAGGGTGAAGACTTGGATAGAGAGACTCCTACATAATTAAGTGG
AAAAAATGGACAAATATTAAGAAAGTAAATAGATCACAAAGATAGGATGA
ACAATCAGGTAATGATAAAATATGAGAAAACACCGGAAGTAGCTAGGAGT
GGAAGCATGCAAAAAAGAGGGCGATATATTGGCAGAATGAAGAATGTAGA
GAAATAATGTGAATAAAAAAGAGGAATTGTAGTGAGTGGAGA