EY674965 | Citrus Genome Database

Overview


Name	EY674965
Unique Name	EY674965
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	992

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.501e-39
Identity = 73/92 (79.35%), Postives = 79/92 (85.87%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149

HSP 2 Score: 76.2554 bits (186), Expect = 3.173e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNP+LIHAQSILA+WA QVVLMG    YR+ GGPL
Sbjct:  132 KAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.723e-38
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG      G    LG P
Sbjct:   58 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNP 149

HSP 2 Score: 76.6406 bits (187), Expect = 2.430e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNP+LIHAQSILAIWA QVVLMG    YR+ GGPL
Sbjct:  132 KAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.723e-38
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG      G    LG P
Sbjct:   30 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNP 121

HSP 2 Score: 76.2554 bits (186), Expect = 3.173e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNP+LIHAQSILAIWA QVVLMG    YR+ GGPL
Sbjct:  104 KAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPL 153

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.335e-38
Identity = 69/84 (82.14%), Postives = 71/84 (84.52%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRG 253
            LGP SG PPSYLTGEFPGDYGWDT GLSADP+TFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG      G
Sbjct:   57 LGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEG 140

HSP 2 Score: 25.7942 bits (55), Expect = 9.335e-38
Identity = 13/35 (37.14%), Postives = 17/35 (48.57%), Query Frame = 1

Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRP 441
            G +EG  +  GR GE  +P+Y        GLG  P
Sbjct:  168 GAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDP 202

HSP 3 Score: 70.8626 bits (172), Expect = 1.333e-11
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG L + GNPSL+HAQSILAIWACQVVLMG    Y +AGG L
Sbjct:  131 KAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRL 180

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.083e-37
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG      G    LG P
Sbjct:   56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 147

HSP 2 Score: 77.0258 bits (188), Expect = 1.860e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNP+L+HAQSILAIWA QVVLMG    YR+ GGPL
Sbjct:  130 KAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.083e-37
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG      G    LG P
Sbjct:   56 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 147

HSP 2 Score: 77.0258 bits (188), Expect = 1.860e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNP+L+HAQSILAIWA QVVLMG    YR+ GGPL
Sbjct:  130 KAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPL 179

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.083e-37
Identity = 72/92 (78.26%), Postives = 78/92 (84.78%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAG      G    LG P
Sbjct:   57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNP 148

HSP 2 Score: 77.411 bits (189), Expect = 1.425e-13
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNP+L+HAQSILAIWA QVVLMG    YR+ GGPL
Sbjct:  131 KAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPL 180

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.413e-37
Identity = 72/92 (78.26%), Postives = 76/92 (82.61%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS   PSYLTGEFPGDYGWDTA +SADP+TFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAG      G     G P
Sbjct:   59 LGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNP 150

HSP 2 Score: 76.6406 bits (187), Expect = 2.430e-13
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDY GNP+LIHAQSILAIWACQVVLMG    YR+ GG L
Sbjct:  133 KAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTL 182

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.021e-37
Identity = 72/92 (78.26%), Postives = 76/92 (82.61%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYLTGEFPGDYGWDTAGLSADP+TFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG      G    LG P
Sbjct:   58 LGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNP 149

HSP 2 Score: 75.0998 bits (183), Expect = 7.070e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IF+EG LDYLGNP+LIHAQSILAIWA QVVLMG    YR+ GGPL
Sbjct:  132 KAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPL 181

[Close]

BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.943e-36
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 2

Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYL GEF GDYGWDTAGLS+DP+TFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAG      G    LG P
Sbjct:   61 LGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNP 152

HSP 2 Score: 84.3445 bits (207), Expect = 1.165e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3

Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNPSL+HAQSILAIWACQVVLMG    YR+AGGPL
Sbjct:  135 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL 184

The following BLAST results are available for this feature:

BLAST of EY674965 vs. ExPASy Swiss-Prot

BLAST of EY674965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB23_TOBAC	7.501e-39	79.35	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB26_PETSP	3.723e-38	78.26	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB25_SOLLC	3.723e-38	78.26	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB48_MAIZE	9.335e-38	82.14	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]
CB23_ORYSJ	1.083e-37	78.26	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	1.083e-37	78.26	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_LEMGI	1.083e-37	78.26	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_PINTH	2.413e-37	78.26	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB215_PEA	7.021e-37	78.26	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB2_PHYPA	5.943e-36	76.09	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-401-004-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY674965 ID=EY674965; Name=EY674965; organism=Citrus sinensis; type=EST; length=992bp
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAAAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGGCCCATATCTTCAGCGA
GGGCAGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAAAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGGACCCATTGAAGG
TACAGAATTGCTGGAGGGCCGCTCCGGAGAAGAGAAAGAACCAATGTACG
CCAAAAGACAACTTTGATCCAATGGGTTAGGCAGAAGACCGAGAAGTTTA
TGGTAGAGCCCAAGGATAAGAGAAACAAGAAAAGGATAGATGGGGAAGTG
AAGACGTGGTGTTGGGTATCAGTCCTTTAAAGGGAATTTAAAAAAGGAGA
GGGGAACAATAAAAAAAAACTTGGGATAAACACGTTGGGAAAGGATCGTA
AGGAGAAGAAGGCCTTGAGAACGAAAGAACCTAAAAAATGGCCCACGAGG
AAAAAGAGAAAACCAGGAGAGAATAAAAAGAAAAAGACAACTTTTGGGGG
ATGAAGACGAAACACAAGCAGCAAGAAGTAGAGAGGGGAAAGAGCGCAGG
TGGGGACAGGGTGAAGACTTGGATAGAGAGACTCCTACATAATTAAGTGG
AAAAAATGGACAAATATTAAGAAAGTAAATAGATCACAAAGATAGGATGA
ACAATCAGGTAATGATAAAATATGAGAAAACACCGGAAGTAGCTAGGAGT
GGAAGCATGCAAAAAAGAGGGCGATATATTGGCAGAATGAAGAATGTAGA
GAAATAATGTGAATAAAAAAGAGGAATTGTAGTGAGTGGAGA