EY674965

Overview
NameEY674965
Unique NameEY674965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.781e-32
Identity = 68/92 (73.91%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEFPGDYGWDTAGLSA P+TFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAG      G    LG P
Sbjct:   62 LGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNP 153          

HSP 2 Score: 22.3274 bits (46), Expect = 1.781e-32
Identity = 8/21 (38.10%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  337 GPIEGTELLEGRSGEEKEPMY 399
            G +EG  +  G  GE  +P+Y
Sbjct:  173 GAVEGYRIARGPLGEVTDPLY 193          

HSP 3 Score: 74.3294 bits (181), Expect = 1.206e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNPSL+HAQSILAIW  +V+LMG    YRIA GPL
Sbjct:  136 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPL 185          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.700e-32
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    2 LGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGP+S    P+YLTGEFPGDYGWDTAGLSADP+TF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAG      G    LG P
Sbjct:   45 LGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNP 137          

HSP 2 Score: 21.557 bits (44), Expect = 8.700e-32
Identity = 12/35 (34.29%), Postives = 16/35 (45.71%), Query Frame = 1
Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRP 441
            G IEG  +  G +GE  +P+Y        GL   P
Sbjct:  157 GLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDP 191          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.133e-31
Identity = 69/92 (75.00%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFSGE PSYLTGEF G        LSADP+TFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG      G    LG P
Sbjct:   57 LGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 140          

HSP 2 Score: 23.0978 bits (48), Expect = 1.133e-31
Identity = 12/38 (31.58%), Postives = 17/38 (44.74%), Query Frame = 1
Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRPRSL 450
            G +EG  +  G  GE  +P+Y        GL   P +L
Sbjct:  160 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAL 197          

HSP 3 Score: 79.7221 bits (195), Expect = 2.870e-14
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + G+ IFSEG LDYLGNPSLIHAQSILAIWA QV+LMG    YRIAGGPL
Sbjct:  123 KAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 172          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.408e-31
Identity = 65/93 (69.89%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYL GEFPGDYGWDTAGLSADP+ FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG      G    LG P
Sbjct:   59 LGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP 151          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.068e-30
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS   P+YLTGEFPGDYGWDTAGLSADP+TF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAG      G    LG P
Sbjct:   48 LGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSP 140          

HSP 2 Score: 21.557 bits (44), Expect = 2.068e-30
Identity = 12/35 (34.29%), Postives = 16/35 (45.71%), Query Frame = 1
Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRP 441
            G IEG  +  G +GE  +P+Y        GL   P
Sbjct:  160 GLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDP 194          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.365e-30
Identity = 64/93 (68.82%), Postives = 69/93 (74.19%), Query Frame = 2
Query:    2 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGGPYLQRGQA*LLGEP 277
            LGPFS + PSYL GEFPGDYGWDTAGLSADP+ FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG      G    LG P
Sbjct:   56 LGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP 148          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.733e-27
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 2
Query:    2 LGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGGPYLQRGQA*LLG 271
            LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAG      G    LG
Sbjct:   42 LGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLG 133          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.731e-23
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   26 PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGGPYLQRGQA*LLGEP 277
            P   TGEFPGDYGWDTAGLSADP+TF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAG    Q G    LG P
Sbjct:   73 PRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNP 158          

HSP 2 Score: 20.7866 bits (42), Expect = 5.731e-23
Identity = 11/35 (31.43%), Postives = 16/35 (45.71%), Query Frame = 1
Query:  337 GPIEGTELLEGRSGEEKEPMYAKRQL*SNGLGRRP 441
            G +EG  +  G +GE  +P+Y        GL   P
Sbjct:  178 GLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDP 212          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.391e-15
Identity = 40/72 (55.56%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   20 EPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 232
            E P YL GE  GDYG+D  GL   P+ FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK G
Sbjct:   80 EIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTG 151          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.553e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  225 RRGAHIFSEGRLDYLGNPSLIHAQSILAIWACQVVLMGTH*RYRIAGGPL 374
            + GA IFSEG LDYLGNP+LIHAQSILAIWACQVVLMG    YR+ GGPL
Sbjct:   17 KAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 66          
The following BLAST results are available for this feature:
BLAST of EY674965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2_MALDO1.781e-3273.91Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE8.700e-3269.89Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_SOYBN1.133e-3175.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_HORVU4.408e-3169.89Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO2.068e-3069.89Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC6.365e-3068.82Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE1.733e-2766.30Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.731e-2363.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH3.391e-1555.56Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_PINSY7.553e-1578.00Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674965 ID=EY674965; Name=EY674965; organism=Citrus sinensis; type=EST; length=992bp
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAAAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGGCCCATATCTTCAGCGA
GGGCAGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAAAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGGACCCATTGAAGG
TACAGAATTGCTGGAGGGCCGCTCCGGAGAAGAGAAAGAACCAATGTACG
CCAAAAGACAACTTTGATCCAATGGGTTAGGCAGAAGACCGAGAAGTTTA
TGGTAGAGCCCAAGGATAAGAGAAACAAGAAAAGGATAGATGGGGAAGTG
AAGACGTGGTGTTGGGTATCAGTCCTTTAAAGGGAATTTAAAAAAGGAGA
GGGGAACAATAAAAAAAAACTTGGGATAAACACGTTGGGAAAGGATCGTA
AGGAGAAGAAGGCCTTGAGAACGAAAGAACCTAAAAAATGGCCCACGAGG
AAAAAGAGAAAACCAGGAGAGAATAAAAAGAAAAAGACAACTTTTGGGGG
ATGAAGACGAAACACAAGCAGCAAGAAGTAGAGAGGGGAAAGAGCGCAGG
TGGGGACAGGGTGAAGACTTGGATAGAGAGACTCCTACATAATTAAGTGG
AAAAAATGGACAAATATTAAGAAAGTAAATAGATCACAAAGATAGGATGA
ACAATCAGGTAATGATAAAATATGAGAAAACACCGGAAGTAGCTAGGAGT
GGAAGCATGCAAAAAAGAGGGCGATATATTGGCAGAATGAAGAATGTAGA
GAAATAATGTGAATAAAAAAGAGGAATTGTAGTGAGTGGAGA
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