EY674965

Overview
NameEY674965
Unique NameEY674965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.351e-14
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   23 PPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 232
            PP +L G  PGD+G+D  GL++DP++   N++ E++HCRWAMLGA G   PELL + G+      W+ AG
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAG 142          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.509e-12
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   14 SGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 232
            + EPP+ LTGE+P D G+D   L+ADP  +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAG 258          

HSP 2 Score: 72.0182 bits (175), Expect = 5.985e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:   23 PPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 226
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.582e-12
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   23 PPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG 232
            PP +L G  PGD+G+D  GL +DP++   N + E++H RWAMLGA G   PE L + GV      W+ AG
Sbjct:   74 PPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAG 142          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 51/145 (35.17%), Postives = 67/145 (46.21%), Query Frame = 2
Query:   11 FSGEP-PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA-GGPYLQRGQA*LLGEPKPDPRSKXXXXXXXXXXXXXXXXKVQNCWRAAPEKRKNQCTPKDNFDPMG*AED 439
            F G+P P++L G  PGD+G+D  GL+  P+ F + +E E+ HCRWAML   G + PE L       G   W KA     L  GQA  LG P P                     + Q      PEK+K    P   FDP+G ++D
Sbjct:   49 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNPVP---WGNLPTILAIEFLAIAFAEQQRTMEKDPEKKK---YPGGAFDPLGFSKD 180          
BLAST of EY674965 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 2
Query:   17 GEP-PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWFKAGGPYLQRGQA*LLGEPKP 283
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L   N VK  E  W    G     GQA  LG+P P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQE--WAAIPG-----GQATYLGQPVP 135          
The following BLAST results are available for this feature:
BLAST of EY674965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_SOLLC8.351e-1447.14Chlorophyll a-b binding protein 7, chloroplastic O... [more]
LH18_EUGGR3.509e-1247.95Light-harvesting complex I LH38 proteins (Fragment... [more]
CB12_PETHY4.582e-1245.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU2.274e-1135.17Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.274e-1146.15Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-A01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674965 ID=EY674965; Name=EY674965; organism=Citrus sinensis; type=EST; length=992bp
CTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCC
CTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAAAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGGCCCATATCTTCAGCGA
GGGCAGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAAAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGGACCCATTGAAGG
TACAGAATTGCTGGAGGGCCGCTCCGGAGAAGAGAAAGAACCAATGTACG
CCAAAAGACAACTTTGATCCAATGGGTTAGGCAGAAGACCGAGAAGTTTA
TGGTAGAGCCCAAGGATAAGAGAAACAAGAAAAGGATAGATGGGGAAGTG
AAGACGTGGTGTTGGGTATCAGTCCTTTAAAGGGAATTTAAAAAAGGAGA
GGGGAACAATAAAAAAAAACTTGGGATAAACACGTTGGGAAAGGATCGTA
AGGAGAAGAAGGCCTTGAGAACGAAAGAACCTAAAAAATGGCCCACGAGG
AAAAAGAGAAAACCAGGAGAGAATAAAAAGAAAAAGACAACTTTTGGGGG
ATGAAGACGAAACACAAGCAGCAAGAAGTAGAGAGGGGAAAGAGCGCAGG
TGGGGACAGGGTGAAGACTTGGATAGAGAGACTCCTACATAATTAAGTGG
AAAAAATGGACAAATATTAAGAAAGTAAATAGATCACAAAGATAGGATGA
ACAATCAGGTAATGATAAAATATGAGAAAACACCGGAAGTAGCTAGGAGT
GGAAGCATGCAAAAAAGAGGGCGATATATTGGCAGAATGAAGAATGTAGA
GAAATAATGTGAATAAAAAAGAGGAATTGTAGTGAGTGGAGA
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