EY674958

Overview
NameEY674958
Unique NameEY674958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_BORPA (Uroporphyrinogen decarboxylase OS=Bordetella parapertussis GN=hemE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.756e-13
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQ 491
            N D   E++L P         ILFSDILT    M +  D   G+GP    P+  +++V ++   D + S+ YV  A+  +R E++    ++GF G+P+T+  Y VEG  S  +  IK + + +P +LH +L+
Sbjct:   54 NPDYACEVTLQPLARYPLDAAILFSDILTVPHAMGLGLDFAPGEGPRFAHPVRDESDVAKLAVPDMD-SLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMVEGRGSDDYRLIKSMLYGRPDLLHRILE 184          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_BORBR (Uroporphyrinogen decarboxylase OS=Bordetella bronchiseptica GN=hemE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.756e-13
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQ 491
            N D   E++L P         ILFSDILT    M +  D   G+GP    P+  +++V ++   D + S+ YV  A+  +R E++    ++GF G+P+T+  Y VEG  S  +  IK + + +P +LH +L+
Sbjct:   54 NPDYACEVTLQPLARYPLDAAILFSDILTVPHAMGLGLDFAPGEGPRFAHPVRDESDVAKLAVPDMD-SLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMVEGRGSDDYRLIKSMLYGRPDLLHRILE 184          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_ACISJ (Uroporphyrinogen decarboxylase OS=Acidovorax sp. (strain JS42) GN=hemE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.756e-13
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            NV+   E++L P         ILFSDILT    M +     +G+GP     +  +A+V  +   D ++ + YV  A+T +R  +N    ++GF G+P+TL  Y VEG  S  +  +K L +S+P ++H +L
Sbjct:   54 NVEYATEVTLQPLERFPLDAAILFSDILTVPDAMGLGLSFAEGEGPRFAKAVRDEADVAALAVPDLDK-LRYVFDAVTSIRRALNGRVPLIGFSGSPWTLACYMVEGKGSDDYRLVKTLMYSRPDLMHRIL 183          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_SHEEP (Uroporphyrinogen decarboxylase OS=Ovis aries GN=UROD PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.293e-13
Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  114 EISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE---ESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQ 491
            E++L P         I+FSDIL     + +   ++ GKGP   +P+  + +++++R  DP      + YV +A+T+ R+++     ++GF GAP+TL +Y VEGG S   ++ KR  + +P+  H LL+
Sbjct:   67 ELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLERLR--DPATVASELGYVFQAITLTRQQLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMSQAKRWLYQRPQASHQLLR 193          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_POLSJ (Uroporphyrinogen decarboxylase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=hemE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.293e-13
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            N D   E++L P         ILFSDILT    M +      G+GP    P+  +A V ++ E      + YV  A+T +R+ +N    ++GF G+P+TL  Y VEG  S  +  +K + + +P ++H +L
Sbjct:   53 NTDYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLSFALGEGPRFATPVRDEAAVARL-EVPDMGKLRYVFDAVTSIRKALNGRVPLIGFSGSPWTLACYMVEGAGSDDYRLVKTMLYQRPDLMHKML 182          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_POLNA (Uroporphyrinogen decarboxylase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hemE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.995e-13
Identity = 41/131 (31.30%), Postives = 67/131 (51.15%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            N D   E++L P         ILFSDILT    M +      G+GP    P+  +A V+++ E      + YV  A+T +R+ +     ++GF G+P+TL  Y VEG  S  +  +K + + +P ++H +L
Sbjct:   53 NTDYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLSFALGEGPRFATPVRDEAAVNKL-EVPDMNKLRYVFDAVTSIRKALGGRVPLIGFSGSPWTLACYMVEGSGSDDYRLVKTMLYQRPDLMHKML 182          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_VESOH (Uroporphyrinogen decarboxylase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=hemE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.911e-13
Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  102 DLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            +L  E+++ P         ILFSDILT    M +    ++G+GP   +PI    ++ ++   D    + YV   ++ +++ +NN   ++GF G+P+TL +Y +EGG  + F   K++ F+ P+ LH LL K
Sbjct:   50 ELACEVTMQPIDRFDLDAAILFSDILTIPDAMGLGLYFMEGEGPKFRNPIKNLKDIKKIST-DLNNDLSYVFDGVSTIKKSLNNRVPLIGFSGSPWTLATYMIEGG-GRIFASTKKMLFNDPEALHLLLMK 178          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_MOUSE (Uroporphyrinogen decarboxylase OS=Mus musculus GN=Urod PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.911e-13
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  114 EISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEES-VPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            E++L P         I+FSDIL     + +   ++ GKGP   +P+  + +++++R+     S + YV +A+T+ R+ +     ++GF GAP+TL +Y VEGGSS    + KR  + +P+  H LL
Sbjct:   67 ELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLERLRDPAAAASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGSSSTMAQAKRWLYQRPQASHKLL 192          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_DELAS (Uroporphyrinogen decarboxylase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=hemE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.108e-13
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            NVD   E++L P         ILFSDILT    M +     +G+GP     +  +A V ++   D ++ + YV  A+T +R  ++    ++GF G+P+TL  Y VEG  S  +  +K L +++P ++H +L
Sbjct:   54 NVDYATEVTLQPLERFPLDAAILFSDILTVPDAMGLGLSFAEGEGPRFAKVVRDEAAVAELAVPDMDK-LRYVFDAVTSIRRALDGRVPLIGFSGSPWTLACYMVEGKGSDDYRLVKSLMYARPDLMHRIL 183          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_BURXL (Uroporphyrinogen decarboxylase OS=Burkholderia xenovorans (strain LB400) GN=hemE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.108e-13
Identity = 41/136 (30.15%), Postives = 71/136 (52.21%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESA-----VLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            N     E++L P         ILFSDILT    M +  + + G+GP    P+ T+ +V ++   D + ++ YV  A+  +R  + +        ++GF G+P+TL  Y VEGG S  F  +K + +++P ++H +L
Sbjct:   53 NPAFATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLEFVTGEGPKFARPVRTEDDVARLAVPDIDATLRYVTDAVREIRTALTDAQGRQRVPLIGFSGSPWTLACYMVEGGGSADFRTVKSMLYARPDLMHRIL 188          
The following BLAST results are available for this feature:
BLAST of EY674958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
DCUP_BORPA1.756e-1332.58Uroporphyrinogen decarboxylase OS=Bordetella parap... [more]
DCUP_BORBR1.756e-1332.58Uroporphyrinogen decarboxylase OS=Bordetella bronc... [more]
DCUP_ACISJ1.756e-1332.82Uroporphyrinogen decarboxylase OS=Acidovorax sp. (... [more]
DCUP_SHEEP2.293e-1331.78Uroporphyrinogen decarboxylase OS=Ovis aries GN=UR... [more]
DCUP_POLSJ2.293e-1332.06Uroporphyrinogen decarboxylase OS=Polaromonas sp. ... [more]
DCUP_POLNA2.995e-1331.30Uroporphyrinogen decarboxylase OS=Polaromonas naph... [more]
DCUP_VESOH3.911e-1331.30Uroporphyrinogen decarboxylase OS=Vesicomyosocius ... [more]
DCUP_MOUSE3.911e-1332.54Uroporphyrinogen decarboxylase OS=Mus musculus GN=... [more]
DCUP_DELAS5.108e-1332.06Uroporphyrinogen decarboxylase OS=Delftia acidovor... [more]
DCUP_BURXL5.108e-1330.15Uroporphyrinogen decarboxylase OS=Burkholderia xen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674958 ID=EY674958; Name=EY674958; organism=Citrus sinensis; type=EST; length=957bp
ACACACTCAACTAATTCAATTGAAAGGTTACGCGGTTCGGGTCCGGATAC
CCGGGTTCAACCCACACTTCCGCTTCATTACGTGCACCCCCTTAAAATGT
TGATCTTGTTGTGGAAATTTCTCTTCCCCCGTGGCATGTTTTATAGCCAC
ATGGTGTCATTTTATTCTCTGACATTTTAACTCCTCTTTCTGGGATGAAT
ATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATATTTGATCCTAT
AAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGT
CAGTTCCCTATGTTGGGAAAGCATTGACTATCATGCGAGAAGAGGTAAAC
AATGAATCAGCAGTTCTGGGTTTTGAAGGGGCTCCTTTCACCCTGACGTC
ATATGAGGTTGAGGGTGGTTCATCGAAGCACTTCAACAAAATAAAGCGAC
TAGCTTTCTCCCAACCCAAGGTCCTCCATGCATTGCTTCAGAAATTTAAC
ACCCTCTATGGCTAGATATGGAACATACCCAACCTGACCTAGGAGCTCAC
GGCTTTCCAAACCTCCAATCCATGGGCCATGGAACCTCATTCAGGTGAAA
TTTGAAAAGTTATATCGGCTTTAGCTTGATGCTAATTGTAAATCCCTGTG
TACAAATACATTCCTGATCTCTCTATAATTCCTTTTACCAATGGGACTAG
TTGGCTGCGTAAAAAAGATACTTTAAACGGAGATGAAGATTAGTAACTTG
ATCTGGAACATTGACTAGGTGAAAGGTAATCGGCAATTTGGGCCCCAAAC
TAGACAATAAAGGAAATGCACACCTGGGTAACTTTTTCGAGTAATAAAAC
TACACAGCACAAGCGATAAAGGGATCAAGTGAAAAAACGGTGAACTAGTA
GGAAAGTTAATGTCTGAGAACACAAGTATTAAGATACGAAAAAAAAAAGA
AACAAGA
back to top