EY674958

Overview
NameEY674958
Unique NameEY674958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_DICDI (Uroporphyrinogen decarboxylase OS=Dictyostelium discoideum GN=hemE PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.803e-11
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 3
Query:  102 DLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVR-EFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALL 488
            +L  +++L P         I+FSDIL     M I   +I GKGP   +PI T  ++ +V+   D  + + YV  ALT+ R+ +     ++GF GAP+TL +Y +EG      +  K   +  P   H  L
Sbjct:   63 ELACKVTLQPLDRFPLDAAIIFSDILVVPQAMGIEVQMIPGKGPFFPNPIRTIEDLSRVQFPVDVNKELGYVFDALTLTRKRLEGRVPLIGFTGAPWTLMTYCIEGSGGTTMSNSKSWLYKHPAESHKFL 192          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_TROWT (Uroporphyrinogen decarboxylase OS=Tropheryma whipplei (strain Twist) GN=hemE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVN--NESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNTLYG 512
            N DL  EI+L P         ILFSDI+ PL    +  DI+ G GPV+ +PI+T   V+ +      +S+ + G    I R  V+  N   ++GF GAP+TL  Y VEGG SK   K + +     K    ++     L G
Sbjct:   77 NPDLACEITLQPVRRYSVDAAILFSDIVVPLKLAGVGVDILPGTGPVLNNPIDTPDRVNTLLA-KTADSIDF-GIIAEITRHTVSVLNGIPLIGFAGAPYTLACYMVEGGPSKTHMKARAMMHGDKKTWQKVMMLAARLSG 215          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_TROW8 (Uroporphyrinogen decarboxylase OS=Tropheryma whipplei (strain TW08/27) GN=hemE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVN--NESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQKFNTLYG 512
            N DL  EI+L P         ILFSDI+ PL    +  DI+ G GPV+ +PI+T   V+ +      +S+ + G    I R  V+  N   ++GF GAP+TL  Y VEGG SK   K + +     K    ++     L G
Sbjct:   77 NPDLACEITLQPVRRYSVDAAILFSDIVVPLKLAGVGVDILPGTGPVLNNPIDTPDRVNTLLA-KTADSIDF-GIIAEITRHTVSVLNGIPLIGFAGAPYTLACYMVEGGPSKTHMKARAMMHGDKKTWQKVMMLAARLSG 215          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_RHORT (Uroporphyrinogen decarboxylase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hemE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  105 LVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQ 491
            L VE++L P         ILFSDIL   + +       +G+GPV+ DP+ + A+V+ +      E +  V + +  +   + + +A++GF GAP+T+ +Y +EGGSSK F+  K   +S+P    AL++
Sbjct:   57 LAVEVTLQPLRRYAFDAAILFSDILVVPNAIGRQVAFKQGEGPVL-DPLTSRADVEALEPGKLRERLGPVFETVRGLASAIPSTTALIGFAGAPWTVATYMLEGGSSKDFSVAKSWIYSRPDDFAALME 184          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_RALSO (Uroporphyrinogen decarboxylase OS=Ralstonia solanacearum GN=hemE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  114 EISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESA----VLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQ 491
            E++L P         ILFSDILT    M +     +G+GP    P+ ++A+V  +   D   S+ YV  A++ +R  +  +      ++GF G+P+TL  Y VEGG S  F  +K + +++P ++H +L+
Sbjct:   59 EVTLQPLDRYPLDAAILFSDILTVPDAMGLGLSFEQGEGPRFARPVRSEADVAALSVPDMA-SLQYVFDAVSEIRRALVQDGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMLYARPDLMHRILE 187          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_WOLWR (Uroporphyrinogen decarboxylase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=hemE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKI 443
            N DLV E++L P         I+FSDIL     +    + ++G GP+I  P+ +  E+   +E + + ++P +  A+  +R ++  E +++GF G P+T+ SY +EGGSSK F+K+
Sbjct:   52 NTDLVTELTLQPVTRFDMDAAIIFSDILIIADVLGCDVNFVRGVGPII-KPVESPKELKGPQEIETK-TLPILN-AIKKVRSQLPKEKSLIGFAGGPWTVASYIIEGGSSKTFSKV 164          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_YEAST (Uroporphyrinogen decarboxylase OS=Saccharomyces cerevisiae GN=HEM12 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  159 ILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREF--DPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            I+FSDIL     M +  ++++GKGP   +P+    ++  V ++  D  + + +  KA+T+ R +++ E  + GF G P+TL  Y  EGG S+ F   K+     P++ H LLQK
Sbjct:   77 IIFSDILVIPQAMGMRVEMLEGKGPHFPEPLRNPEDLQTVLDYKVDVLKELDWAFKAITMTRIKLDGEVPLFGFCGGPWTLMVYMTEGGGSRLFRFAKQWINMYPELSHKLLQK 190          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_WOLTR (Uroporphyrinogen decarboxylase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=hemE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 43/133 (32.33%), Postives = 74/133 (55.64%), Query Frame = 3
Query:   96 NVDLVVEISLPPWHVL*PHGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQK 494
            N DLVVE++L P         I+FSDIL     +    D I+G GP I  P+    E+   ++ + + ++P +  A+  +R+++  E +++GF G P+T+ SY +EG SSK F+K+  L    P  L  ++++
Sbjct:   61 NTDLVVELTLQPVARFSMDAAIIFSDILIVADVLGCDVDFIRGVGPTI-KPVKNFKELRNPQKIETK-TLPILN-AIRKVRDKLPEEKSLIGFAGGPWTVASYIIEGRSSKTFSKVLNL---HPSSLEQIIEQ 187          
BLAST of EY674958 vs. ExPASy Swiss-Prot
Match: DCUP_SCHPO (Uroporphyrinogen decarboxylase OS=Schizosaccharomyces pombe GN=hem12 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  159 ILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREF-DPEESVPYVGKALTIMREEVNNESAVLGFEGAPFTLTSYEVEGGSSKHFNKIKRLAFSQPKVLHALLQ 491
            I+FSDIL     + +   +++ KGP    P+    ++D + +  +    + YV  A+++ RE+++ +  ++GF GAP+T+ +Y +EGG SK F K K   F  P+  H LL+
Sbjct:   71 IIFSDILVIPQALGMQVVMLEQKGPHFPKPLVVPEDIDLLEKTPNISAKLGYVMDAISLTREKLDGQVPLMGFSGAPWTIMAYMIEGGGSKTFAKAKSWLFRYPEASHKLLK 182          
The following BLAST results are available for this feature:
BLAST of EY674958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
DCUP_DICDI2.803e-1131.54Uroporphyrinogen decarboxylase OS=Dictyostelium di... [more]
DCUP_TROWT3.661e-1134.75Uroporphyrinogen decarboxylase OS=Tropheryma whipp... [more]
DCUP_TROW83.661e-1134.75Uroporphyrinogen decarboxylase OS=Tropheryma whipp... [more]
DCUP_RHORT3.661e-1132.56Uroporphyrinogen decarboxylase OS=Rhodospirillum r... [more]
DCUP_RALSO3.661e-1131.54Uroporphyrinogen decarboxylase OS=Ralstonia solana... [more]
DCUP_WOLWR4.781e-1133.62Uroporphyrinogen decarboxylase OS=Wolbachia sp. su... [more]
DCUP_YEAST8.155e-1133.33Uroporphyrinogen decarboxylase OS=Saccharomyces ce... [more]
DCUP_WOLTR8.155e-1132.33Uroporphyrinogen decarboxylase OS=Wolbachia sp. su... [more]
DCUP_SCHPO8.155e-1132.14Uroporphyrinogen decarboxylase OS=Schizosaccharomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674958 ID=EY674958; Name=EY674958; organism=Citrus sinensis; type=EST; length=957bp
ACACACTCAACTAATTCAATTGAAAGGTTACGCGGTTCGGGTCCGGATAC
CCGGGTTCAACCCACACTTCCGCTTCATTACGTGCACCCCCTTAAAATGT
TGATCTTGTTGTGGAAATTTCTCTTCCCCCGTGGCATGTTTTATAGCCAC
ATGGTGTCATTTTATTCTCTGACATTTTAACTCCTCTTTCTGGGATGAAT
ATACCTTTTGACATTATCAAGGGTAAGGGTCCTGTCATATTTGATCCTAT
AAACACAGATGCAGAAGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGT
CAGTTCCCTATGTTGGGAAAGCATTGACTATCATGCGAGAAGAGGTAAAC
AATGAATCAGCAGTTCTGGGTTTTGAAGGGGCTCCTTTCACCCTGACGTC
ATATGAGGTTGAGGGTGGTTCATCGAAGCACTTCAACAAAATAAAGCGAC
TAGCTTTCTCCCAACCCAAGGTCCTCCATGCATTGCTTCAGAAATTTAAC
ACCCTCTATGGCTAGATATGGAACATACCCAACCTGACCTAGGAGCTCAC
GGCTTTCCAAACCTCCAATCCATGGGCCATGGAACCTCATTCAGGTGAAA
TTTGAAAAGTTATATCGGCTTTAGCTTGATGCTAATTGTAAATCCCTGTG
TACAAATACATTCCTGATCTCTCTATAATTCCTTTTACCAATGGGACTAG
TTGGCTGCGTAAAAAAGATACTTTAAACGGAGATGAAGATTAGTAACTTG
ATCTGGAACATTGACTAGGTGAAAGGTAATCGGCAATTTGGGCCCCAAAC
TAGACAATAAAGGAAATGCACACCTGGGTAACTTTTTCGAGTAATAAAAC
TACACAGCACAAGCGATAAAGGGATCAAGTGAAAAAACGGTGAACTAGTA
GGAAAGTTAATGTCTGAGAACACAAGTATTAAGATACGAAAAAAAAAAGA
AACAAGA
back to top