EY674955

Overview
NameEY674955
Unique NameEY674955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_CARHZ (Uroporphyrinogen decarboxylase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=hemE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.906e-45
Identity = 91/192 (47.40%), Postives = 124/192 (64.58%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVDTVKTT 577
            F E  +  +L VE++LQP      D  ILF+DIL PL GM I F   + +GPVI +P+ T  +V +VR   PEE VPYV +A+ ILR E+  +  ++GF GAPFTLASY++EGG SK++ + KRL +  P+  H LL K   S  +Y++ Q   GAQAVQ+FDSW   LSP D+EK+ LP+ K + D +K T
Sbjct:   41 FLEMCKTPELAVEVTLQPVRKLGVDAAILFADILLPLEGMGIGFRFARDEGPVIENPVRTIVDVKKVRVITPEEDVPYVLEAIKILRRELAGKVPLIGFSGAPFTLASYIIEGGGSKNYIQCKRLMWEAPEAWHELLGKIAESTVRYLKAQIAAGAQAVQVFDSWVGTLSPEDYEKYVLPHSKYVFDNLKET 232          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_VIBCH (Uroporphyrinogen decarboxylase OS=Vibrio cholerae GN=hemE PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 5.121e-40
Identity = 84/187 (44.92%), Postives = 120/187 (64.17%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV   PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +S+P VLHALL K   S+  Y+  Q   GAQAV +FD+W   L+P D+++FSL Y+ +IVD
Sbjct:   46 FMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVD 232          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_VIBC3 (Uroporphyrinogen decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=hemE PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 5.121e-40
Identity = 84/187 (44.92%), Postives = 120/187 (64.17%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV   PI   A+VD++   DPE  + YV  A+  +R+++  E  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +S+P VLHALL K   S+  Y+  Q   GAQAV +FD+W   L+P D+++FSL Y+ +IVD
Sbjct:   46 FMALCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVRQIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSVISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVD 232          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_MYXXD (Uroporphyrinogen decarboxylase OS=Myxococcus xanthus (strain DK 1622) GN=hemE PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.490e-39
Identity = 82/192 (42.71%), Postives = 121/192 (63.02%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVDTVKTT 577
            F +  ++ DL  E+++QP      D  I+FSDIL P+  M I  ++   KGP   DP+ + A++D++   DP E   +V +A+   R+ +N+   V+GF GAPFTLA+Y+VEGG SK +  IKRL F QP++ H L  K T ++  Y++ Q + GA  VQIFDSW   LSP D+E+F +PYLK++V  +K T
Sbjct:   41 FLDLCKHPDLAAEVTVQPVTRLGVDAAIIFSDILIPVEAMGITLEL-GDKGPHFPDPVRSAADIDKLGVPDPVEGTGFVAEAIRRTRKALNDSVPVIGFAGAPFTLAAYMVEGGGSKSYILIKRLMFEQPELAHRLFGKLTDTLIPYLKMQVEAGASIVQIFDSWGGALSPWDYERFCIPYLKRMVSELKAT 231          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_PSEA6 (Uroporphyrinogen decarboxylase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemE PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.542e-39
Identity = 81/187 (43.32%), Postives = 118/187 (63.10%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F    +N +L  E++LQP   F  D  ILFSDILT    M +     +G+GP    PI + A++  +   DPE+ + YV  A+  +R+ +  E  ++GF G+P+TLA+Y++EGGSSK F+KIK++AFS P+ LH LL K   S+  Y+  Q D GAQ+V +FD+W   LSP D++ FSL Y+ +IVD
Sbjct:   46 FMSLCKNAELACEVTLQPLRRFDLDAAILFSDILTIPDAMGLGLYFEQGEGPKFSKPITSMADIQNLPAPDPEQELQYVMNAVRTIRKNLQGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMAFSDPQALHLLLDKLADSVILYLNAQIDAGAQSVMVFDTWGGVLSPRDYQDFSLQYMHKIVD 232          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_GEOLS (Uroporphyrinogen decarboxylase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemE PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.542e-39
Identity = 85/195 (43.59%), Postives = 125/195 (64.10%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVDTV--KTTP 580
            F E  +  +L  E+++QP  +   D  ILFSDILTP+  M +  D + G  PV  +P+ T A+V+++R  DPE  VPYV +A+ ILR+E+  +  ++GF GAPFTLA Y+VEG  SK ++ IKR+ ++ P V  AL+ K T    +Y+  Q   GAQA+QIFD+W   LSP D+EK+ LPY  ++++ +  K TP
Sbjct:   41 FLELCKTPELAAEVTIQPVDILGVDAAILFSDILTPVEPMGLKLDFVPG--PVFENPVRTMADVEKLRIPDPEADVPYVLQAIRILRKELAGKVPLIGFGGAPFTLACYMVEGKGSKDWATIKRMMYAAPDVYAALMEKVTMMDMEYLNAQIRAGAQAIQIFDTWGGVLSPTDYEKYVLPYTTKLINGLNRKETP 233          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_GEOMG (Uroporphyrinogen decarboxylase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemE PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.336e-39
Identity = 83/187 (44.39%), Postives = 120/187 (64.17%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F E  +  +L  E++LQP  +   D  ILFSDILTP+  M +  D + G  PV   P+ T A+V+++R  +PEE VPYV   + ILR+E+     ++GF GAPFTLA Y+VEG  SK ++ IKR+ ++ P+V  AL+ K T    +Y+  Q   GAQA+QIFD+W   LSP D+EKF LPY +++++
Sbjct:   41 FLELCKTPELAAEVTLQPVDILGVDAAILFSDILTPVEPMGLKLDFVPG--PVFETPVRTMADVERLRIPNPEEDVPYVLDTIKILRKELAGRVPLIGFGGAPFTLACYMVEGKGSKDWATIKRMMYAAPEVYAALMDKVTMMDMEYLNAQIRAGAQAIQIFDTWGGVLSPTDYEKFVLPYTRKLIN 225          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_COLP3 (Uroporphyrinogen decarboxylase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=hemE PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.662e-39
Identity = 80/187 (42.78%), Postives = 118/187 (63.10%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F    +N +L  E+++QP   F  D  ILFSDILT    M +      G+GP    PI   A+VD++   DPE+ + YV  A+  +R+E+  E  ++GF G+P+TLA+Y++EGGSSK F+KIK++ F++P+ LH LL K   S+  Y+  Q   GAQ+V +FD+W   LSP D+ +FSL Y+ +IVD
Sbjct:   46 FMSVCKNAELACEVTIQPLRRFPLDAAILFSDILTIPDAMGLGLYFETGEGPKFERPITCKADVDKIAVPDPEDELGYVMNAVRTIRKELKGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMMFAEPQTLHLLLDKLADSVISYLNAQIAAGAQSVMVFDTWGGVLSPRDYNEFSLQYMAKIVD 232          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_VIBVY (Uroporphyrinogen decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=hemE PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.810e-38
Identity = 78/187 (41.71%), Postives = 120/187 (64.17%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GP+  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+  FSL Y+ +IVD
Sbjct:   46 FMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFSTGEGPIFDNPITCKADVEKIGVPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPQTLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNLFSLQYMHKIVD 232          
BLAST of EY674955 vs. ExPASy Swiss-Prot
Match: DCUP_VIBVU (Uroporphyrinogen decarboxylase OS=Vibrio vulnificus GN=hemE PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.810e-38
Identity = 78/187 (41.71%), Postives = 120/187 (64.17%), Query Frame = 2
Query:    2 FRETSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEKFSLPYLKQIVD 562
            F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GP+  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +++P+ LH LL K   S+ +Y+  Q   GAQ+V +FD+W   L+P D+  FSL Y+ +IVD
Sbjct:   46 FMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFSTGEGPIFDNPITCKADVEKIGVPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYAEPQTLHLLLDKLADSVIEYLNAQIKAGAQSVMVFDTWGGVLTPRDYNLFSLQYMHKIVD 232          
The following BLAST results are available for this feature:
BLAST of EY674955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_CARHZ6.906e-4547.40Uroporphyrinogen decarboxylase OS=Carboxydothermus... [more]
DCUP_VIBCH5.121e-4044.92Uroporphyrinogen decarboxylase OS=Vibrio cholerae ... [more]
DCUP_VIBC35.121e-4044.92Uroporphyrinogen decarboxylase OS=Vibrio cholerae ... [more]
DCUP_MYXXD1.490e-3942.71Uroporphyrinogen decarboxylase OS=Myxococcus xanth... [more]
DCUP_PSEA62.542e-3943.32Uroporphyrinogen decarboxylase OS=Pseudoalteromona... [more]
DCUP_GEOLS2.542e-3943.59Uroporphyrinogen decarboxylase OS=Geobacter lovley... [more]
DCUP_GEOMG4.336e-3944.39Uroporphyrinogen decarboxylase OS=Geobacter metall... [more]
DCUP_COLP35.662e-3942.78Uroporphyrinogen decarboxylase OS=Colwellia psychr... [more]
DCUP_VIBVY2.810e-3841.71Uroporphyrinogen decarboxylase OS=Vibrio vulnificu... [more]
DCUP_VIBVU2.810e-3841.71Uroporphyrinogen decarboxylase OS=Vibrio vulnificu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-G09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674955 ID=EY674955; Name=EY674955; organism=Citrus sinensis; type=EST; length=983bp
ATTTCGTGAAACATCAGAAAATGTTGATCTTGTTGTGGAAATTTCTCTTC
AGCCGTGGCATGTTTTTAAGCCAGATGGTGTCATTTTATTCTCAGACATT
TTAACTCCTCTTTCTGGGATGAATATACCTTTTGACATTATCAAGGGTAA
GGGTCCTGTCATATTTGATCCTATAAACACAGATGCAGAAGTTGACCAAG
TGAGAGAATTTGATCCTGAGGAGTCAGTTCCATATGTTGGGAAAGCATTG
ACAATCTTGCGAGAAGAGGTAAACAATGAAGCAGCAGTTCTGGGTTTTGT
TGGGGCTCCTTTCACCCTGGCGTCATATGTGGTTGAGGGTGGTTCATCGA
AGCACTTCAGCAAAATAAAGCGACTAGCTTTCTCTCAACCCAAGGTCCTC
CATGCATTGCTTCGGAAATTTACAACCTCTATGGCAAAGTATGTACAATA
CCAAGCTGACAATGGAGCTCAAGCAGTTCAAATCTTCGATTCATGGGCCA
CGGAGCTCAGTCCTGTTGATTTTGAAAAGTTTAGTCTGCCTTACTTGAAG
CAAATTGTAGACACTGTGAAAACAACACCTTCCTGATCTCTCATAAATCC
TTTATGCCCATGGATCTGGTGGCCTTGCTTGAAAGGCTAGCTTTGAACAG
GGTGGAAGTTGTTAGCTTGGAATGGGCAGTTGAACTGGGGTGAAAGGGAA
ACGGGGAATTTGGGCCCCAAACTTTGGCATTTCAAGGGAAATGTCCAATC
CCGGGGGCCCTTTTTCGGTTTTAAAGGGACTTTCTTCCCCCAAACCCGGA
AAAAAATAAAAAACCCTGGAGGGGAAAACCCGGGGTGAAAAAGGGGAAAA
AAAAATTTTTTTTAAAAATTTTTGGGGGCCCCCGGGGCAATTAAAAAAAA
AAAGGGAAAACACCCCGGAAGAGAAAAAAAAAAGTTGTGTGGCTCCCCAT
TTATTTTTTTCCCTCTTCAAAGAAAGAATTTTC
back to top