EY674877

Overview
NameEY674877
Unique NameEY674877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1009
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 1.561e-23
Identity = 88/227 (38.77%), Postives = 111/227 (48.90%), Query Frame = 2
Query:  119 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPTAFAPLAKGNQDKFGHWLRGLENHWST--SFPGTQKNV**GPSSKDWVEG-GRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            IGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAP       ++ V                +      APLAK   D FG     +E   +T  +   TQK V  GPS K W +G G   +    S   TGA  K VGK   P L GK
Sbjct:    1 IGRLVTRAAFNTGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGV-NHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGI----VEGLMTTVHAITATQKTV-DGPSGKLWRDGRGAAQNIIPAS---TGA-AKAVGK-VIPELNGK 214          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.039e-23
Identity = 85/212 (40.09%), Postives = 111/212 (52.36%), Query Frame = 2
Query:  161 VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPTAFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            V+++AV+DPFI   YM YMFKYDSVHG++K   +++KD K ++ G  P+TVF  R+P  I W   GA+YVVES+GVFT               VIISAP       ++ V                +      APLAK   DKFG  + GL +  H +T+   TQK V  GPS+KDW  GGR  + N   +  +    K VGK   P L GK
Sbjct:    6 VKVLAVSDPFIDLQYMVYMFKYDSVHGRFKG-TVEIKDGKLVIDGH-PITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGV-NLDAYDSKYTVISNASCTTNCLAPLAKVINDKFG-IVEGLMSTIHATTA---TQKTV-DGPSNKDW-RGGR--AVNGNIIPSSTGAAKAVGK-VIPALNGK 205          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.663e-23
Identity = 75/214 (35.05%), Postives = 107/214 (50.00%), Query Frame = 2
Query:   80 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPTAFAPLAKGNQDKFGHWLRGLENHWSTSFPG--TQKNV**GPSSKDWVEGGRVSSFN 715
            M  V  GINGFGRIGRLVAR++++  + +L+ VN    T DYM Y FKYDS+HG+++  ++ V  D  ++ G++ +T    R+P++I WA+TG EY+ ESTGVF                VI SAP +  S  ++                  +      APL K   DK+     G+E    T+       + V    S KDW  GGR +S N
Sbjct:   46 MQAVPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQ-GDVVVDGDDLVIDGQRVITT-RARDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVIFSAPAKDDSLTVVMGVNAEDYKGQTDFISCASCTTNGLAPLVKCINDKW-----GIEEGLMTTIHAMTATQAVVDSSSRKDW-RGGRAASGN 251          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.663e-23
Identity = 90/237 (37.97%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK--DNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 225          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.663e-23
Identity = 90/237 (37.97%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK--DNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 225          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.663e-23
Identity = 90/237 (37.97%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK--DNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 225          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.663e-23
Identity = 90/237 (37.97%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK--DNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 225          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.478e-23
Identity = 89/237 (37.55%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSK--DNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 225          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.478e-23
Identity = 89/237 (37.55%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSK--DNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 225          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.542e-23
Identity = 80/210 (38.10%), Postives = 105/210 (50.00%), Query Frame = 2
Query:   92 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQW------KHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPTAFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEG 694
            ++GINGFGRIGRLV RV+L R     +V +NDPFITTD M Y+FKYD+VHG++      K  +L++    TL      + V   +NP EIPW  +  E V+ES+G FT               V+I+AP       +  V                +      APL K   DKFG  +RGL    H +T+   TQK V  GPS K W +G
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHGRFPGTVVGKEGKLEI----TLNGHVYDIAVSACKNPAEIPWGASNVEVVIESSGAFTTMEKAHLHQQGGAKKVLITAPSADAPMFVYGVNHQSLKADQTVF-SNASCTTNCLAPLTKVINDKFG-IVRGLMTTVHSTTA---TQKTV-DGPSGKAWRDG 203          
The following BLAST results are available for this feature:
BLAST of EY674877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
G3P_SHEEP1.561e-2338.77Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_LACDT2.039e-2340.09Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_GUITH2.663e-2335.05Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P1_SHIFL2.663e-2337.97Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI2.663e-2337.97Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL62.663e-2337.97Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO572.663e-2337.97Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_SALTY3.478e-2337.55Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI3.478e-2337.55Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P_MASBA4.542e-2338.10Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674877 ID=EY674877; Name=EY674877; organism=Citrus sinensis; type=EST; length=1009bp
CCACGCGTCCGCTGCTCTCTCTACTCTCTATTTCTTTCTTCACCACTCTT
TCACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGA
ATCAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCA
GAGGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCG
ATTACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAG
CACCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAA
GCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTG
AGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAG
GATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTC
AGCCCCCCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCATTGAGCA
CTAGTACCAACCAGACCTCAACTTTGTGTCCAATGCTAGCTGGCCCACCA
ACTGCCTTTGCTCCCCTTGCTAAGGGCAATCAAGACAAGTTTGGGCATTG
GTTGAGGGGTTTGGAGAACCACTGGTCCACCTCTTTTCCAGGCACCCAAA
AAAACGTGTGATAGGGCCCATCATCAAAGGATTGGGTAGAGGGGGGGAGG
GTTTCTTCTTTTAACCATACTTCCCTTGACTTAACTGGAGCCTTGATAAA
GGGGGTTGGGAAAGAGTCTTGCCCGCCTTTAATGGGGAAAACACGATCTG
GGAATGGCCTTTCCCCTTGCCCCTCATTTTATTATTTGTTTTAGTGTTGG
TTTCCCCTATCCTAAGGGAGTTGTGTGGAATTGAGACTCTCTTCTTATTG
TATAATTATACTCGAAGATTTGTACCCTTCCAGGGGGCGTAATTCCTCTT
AGAGGGTGGTTTACATCATAATGTGGGGGCGCTTCTATCCCGTGTGAAAT
CCTTCCCTT
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