EY674877

Overview
NameEY674877
Unique NameEY674877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1009
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.610e-17
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 2
Query:   80 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQG 466
            + K+K+ INGFGRIGR   R    R D  +E++ VND     +  +++ KYDS+ G +K  E+K+ +++T+    KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP +G
Sbjct:   83 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKN-ASHLLKYDSMLGTFKA-EVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKG 211          

HSP 2 Score: 25.7942 bits (55), Expect = 7.610e-17
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  478 FVVGVIEH*YQPDL-NFVSNASWPTNCL 558
            +V+GV E  Y  ++ + +SNAS  TNCL
Sbjct:  217 YVIGVNEQDYGHEVADIISNASCTTNCL 244          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.297e-17
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP 457
            +K+ INGFGRIGRLV R +L + +VE+VA+ND     + + ++ KYDS HG+ K  ++ VK +  L    K V VF  ++P+ +PW E   + V+ESTG F                VIISAP
Sbjct:    8 IKVAINGFGRIGRLVFRSLLSKANVEVVAIND-LTQPEVLAHLLKYDSAHGELK-RKITVKQN-ILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAKRVIISAP 127          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.286e-16
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 2
Query:   80 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQG 466
            + K+K+ INGFGRIGR   R    R D  +E+V +ND     +  +++ KYDS+ G +K  E+K+ D++T+    K + V   R+P ++PWAE G + V+E TGVF                VII+AP +G
Sbjct:   79 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKN-ASHLLKYDSMLGTFKA-EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKG 207          

HSP 2 Score: 28.4906 bits (62), Expect = 1.286e-16
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  478 FVVGVIEH*YQPDL-NFVSNASWPTNCL 558
            +V+GV E  Y  D+ N +SNAS  TNCL
Sbjct:  213 YVMGVNEQDYGHDVANIISNASCTTNCL 240          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.414e-16
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP 457
            +++GINGFGRIGR   R +L++  D+E+VAVND    T    ++ KYD++ G+ K      +D  T+    K + V   RNP +IPW E G + V+ESTG+FT               V+ISAP
Sbjct:    3 IRVGINGFGRIGRNYFRALLEQGADIEIVAVND-LGDTATTAHLLKYDTILGRLKAEVSHTED--TITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAP 123          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.153e-16
Identity = 79/224 (35.27%), Postives = 109/224 (48.66%), Query Frame = 2
Query:  128 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLTGPSK--DNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 210          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.118e-16
Identity = 79/224 (35.27%), Postives = 108/224 (48.21%), Query Frame = 2
Query:  128 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPT-AFAPLAKGNQDKFGHWLRGLEN--HWSTSFPGTQKNV**GPSSKDWVEGGRVSSFNHTSLDLTGALIKGVGKESCPPLMGK 790
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ P +      ++V                A   T   APLAK   D FG  + GL    H +T+   TQK V  GPS KDW  GGR +S N      TGA  K VGK   P L GK
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSK--DNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFG-IIEGLMTTVHATTA---TQKTV-DGPSHKDW-RGGRGASQNIIP-SSTGA-AKAVGK-VLPELNGK 210          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.773e-16
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 2
Query:   80 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQG 466
            + K+K+ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K  ++K+ D++T+    K + V   R+P ++PWAE G + V+E TGVF                VII+AP +G
Sbjct:   52 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSMLGTFKA-DVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKG 180          

HSP 2 Score: 26.9498 bits (58), Expect = 4.773e-16
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  478 FVVGVIEH*YQPDL-NFVSNASWPTNCL 558
            +VVGV E  Y  ++ + +SNAS  TNCL
Sbjct:  186 YVVGVNEQDYSHEVADIISNASCTTNCL 213          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.024e-16
Identity = 54/175 (30.86%), Postives = 85/175 (48.57%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLLWVXXXXXXXXXXXXCPMLAGPPTAFAPLAKGNQDKFG 595
            V++GINGFGRIGR   R +L +      DV++VA+ND       + Y+ K+DS+ G+  H ++ ++++ T++ G + +    VR  P  +PW   G + VVESTG+FT               VI+SAP       +++                 +      APLAK   D+FG
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEHGIADVQVVAIND-ITDNSTLAYLLKFDSILGRLPH-DVSLEEEDTIVVGSEKIKALAVREGPAALPWHAFGVDVVVESTGLFTNAAKAKGHLEAGAKKVIVSAPATDPDITIVFGVNDDKYDGSQNIISNASCTTNCLAPLAKVLHDQFG 175          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.056e-15
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQGCSYVLL 484
            V+IGINGFGRIGR V R    R  ++E+VAVND       M ++  YDS+ G++   E    +   +  G++ + V   R+P  +PW + G + V+ESTG+FT               VII+AP  G  + ++
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARSSELEIVAVND-LGDVPTMAHLLAYDSILGRFP--EEVTAEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAKKVIIAAPASGEDFTVV 132          

HSP 2 Score: 25.0238 bits (53), Expect = 1.056e-15
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  481 VVGVIEH*YQPDLN-FVSNASWPTNCL 558
            V+GV +  Y P+ +  +SNAS  TNCL
Sbjct:  132 VLGVNDGDYDPERHTIISNASCTTNCL 158          
BLAST of EY674877 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.198e-15
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 2
Query:   89 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPQQG 466
            +K+GINGFGRIGR V R++  R  VE+  +ND    TD  T  ++ KYDS++ ++        DD+ L    K +    V++P+EIPWAE G   V+ESTGVFT               VII+AP +G
Sbjct:    1 MKVGINGFGRIGRQVFRILHSRG-VEVALIND---LTDNKTLAHLLKYDSIYHRFPGEV--AYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKG 122          
The following BLAST results are available for this feature:
BLAST of EY674877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
G3PB_PEA7.610e-1737.40Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_MYCGE8.297e-1740.65Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3PB_ARATH1.286e-1637.40Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_STRCO2.414e-1639.52Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_CITFR3.153e-1635.27Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ESCFE4.118e-1635.27Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3PB_TOBAC4.773e-1636.64Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_MYCLE7.024e-1630.86Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_STRAE1.056e-1535.34Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_THEAQ1.198e-1540.63Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674877 ID=EY674877; Name=EY674877; organism=Citrus sinensis; type=EST; length=1009bp
CCACGCGTCCGCTGCTCTCTCTACTCTCTATTTCTTTCTTCACCACTCTT
TCACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGA
ATCAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCA
GAGGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCG
ATTACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAG
CACCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAA
GCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTG
AGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAG
GATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTC
AGCCCCCCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCATTGAGCA
CTAGTACCAACCAGACCTCAACTTTGTGTCCAATGCTAGCTGGCCCACCA
ACTGCCTTTGCTCCCCTTGCTAAGGGCAATCAAGACAAGTTTGGGCATTG
GTTGAGGGGTTTGGAGAACCACTGGTCCACCTCTTTTCCAGGCACCCAAA
AAAACGTGTGATAGGGCCCATCATCAAAGGATTGGGTAGAGGGGGGGAGG
GTTTCTTCTTTTAACCATACTTCCCTTGACTTAACTGGAGCCTTGATAAA
GGGGGTTGGGAAAGAGTCTTGCCCGCCTTTAATGGGGAAAACACGATCTG
GGAATGGCCTTTCCCCTTGCCCCTCATTTTATTATTTGTTTTAGTGTTGG
TTTCCCCTATCCTAAGGGAGTTGTGTGGAATTGAGACTCTCTTCTTATTG
TATAATTATACTCGAAGATTTGTACCCTTCCAGGGGGCGTAATTCCTCTT
AGAGGGTGGTTTACATCATAATGTGGGGGCGCTTCTATCCCGTGTGAAAT
CCTTCCCTT
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