EY674839

Overview
NameEY674839
Unique NameEY674839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_XENLA (Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_XENBO (Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 166
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_TRIVU (Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_SPECI (Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_SIGHI (Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_SHEEP (Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_RAT (Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_PONAB (Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_PIG (Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of EY674839 vs. ExPASy Swiss-Prot
Match: ACTB_PANTR (Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.025e-63
Identity = 130/173 (75.14%), Postives = 137/173 (79.19%), Query Frame = 2 
Query:    8 EDIHPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF*KLSMCQPCTF-AIQAVLSLLCQWSYKWYCAGFWV-------KGVAHTVTI 502
            +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF   +   P  + AIQAVLSL        Y +G           GV HTV I
Sbjct:    3 DDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSL--------YASGRTTGIVMDSGDGVTHTVPI 165
The following BLAST results are available for this feature:
BLAST of EY674839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 437
Match NameE-valueIdentityDescription
ACTB_XENLA1.025e-6375.14Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=... [more]
ACTB_XENBO1.025e-6375.14Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb P... [more]
ACTB_TRIVU1.025e-6375.14Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=A... [more]
ACTB_SPECI1.025e-6375.14Actin, cytoplasmic 1 OS=Spermophilus citellus GN=A... [more]
ACTB_SIGHI1.025e-6375.14Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB ... [more]
ACTB_SHEEP1.025e-6375.14Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV... [more]
ACTB_RAT1.025e-6375.14Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb ... [more]
ACTB_PONAB1.025e-6375.14Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 ... [more]
ACTB_PIG1.025e-6375.14Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV... [more]
ACTB_PANTR1.025e-6375.14Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-B12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674839 ID=EY674839; Name=EY674839; organism=Citrus sinensis; type=EST; length=922bp
CGATGCTGAGGATATTCACCCCCTTGTTTGTGACAATGGAACTGGAATGG
TGAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGT
ATTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAA
GGATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTT
TGAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAA
AAGATCTGGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGA
GCACCCAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAG
AGAAGATGACCCAAATTATGTTTTGAAAACTTTCAATGTGCCAGCCATGT
ACGTTTGCCATCCAGGCTGTTCTATCTCTTTTATGCCAGTGGTCGTACAA
ATGGTATTGTGCTGGATTCTGGGTGAAAGGTGTGGCTCATACTGTAACCA
TTTTATAAAAGGAAATGCCCTTCCCTCATGGCCATTCCTCGTTTGGACTT
TGGCGGGTCATAATCTCAATGGATGCCTTTGAAGAAAATTCTTACCTGAA
AGAAGTTAAAATGTATAACCAACCCCGCCCAAATGGGAAATTTTTCCACT
GTCATGAAAAGAAAAATCTTTCTTTTTTTTTTCCCCTAAAAAATATATAC
CAAAAACCTTAAAAACCGCCACAAAACACTCCCTTCTCTTTTTTAGAAAA
AACATTAAAACTCACCTATAAAAACAAAAAAAAACACCAATTTGGAACAA
AAAAAAATCACTTTGTGCCCAAAAAATATATTATTCAAAACCACCCCTCT
CAACGGAGAAGGGAAACATCCGGCCGGGGATTCTAATATGAACCCAACAC
TCCCACCCTAACCAACCCCTCT
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