EY674792

Overview
NameEY674792
Unique NameEY674792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1035
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.712e-16
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    1 RAGPGPGFTGRPARRQRLGLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHGLTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNP-QVEALGARYVSLHELLGESQIIGLHCPLTADSINLDYAQSLA 447
            RAG G       A   R G+ +V  P  + H+ AEHA+AL+LA +R++  A    R+  +     +G ++           +IG   A+ +A FG  ++AYDPY +P +   LG   +SL +LL  +  I +H P T ++  L   ++LA
Sbjct:   71 RAGVGLDNVDVDAATAR-GVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219          

HSP 2 Score: 33.8834 bits (76), Expect = 4.712e-16
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  455 QPGAMLINTGRGGLVDTPALINPLKEGQLGYLGLGV 562
            +PG +++N  RGGLVD  AL + +  G +   GL V
Sbjct:  222 KPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 257          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.057e-16
Identity = 42/132 (31.82%), Postives = 61/132 (46.21%), Query Frame = 1
Query:   55 GLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSL-----HGLT--GFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEA-LGARYVSLHELLGESQIIGLHCPLTADSINL 426
            G+ +   P     A A+ A AL+LA+ RR+  A    R G++       H L   G+ L           +IG   AK   GFG +++ Y     P+ E  +GA YV    LL ES  I LH PLT ++ ++
Sbjct:   90 GIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHM 221          

HSP 2 Score: 45.8246 bits (107), Expect = 8.057e-16
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  452 MQPGAMLINTGRGGLVDTPALINPLKEGQLGYLGLGVNEKKGHPCFSKTPRICQLQNDVL 631
            M+P A+LINT RG +VDT ALI  LKEG +   GL V E++  P +++   + +L+N VL
Sbjct:  230 MKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEE--PYYNE--ELFKLKNVVL 285          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.981e-15
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:    1 RAGPGPGFTGRPARRQRLGLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHGLTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNP-QVEALGARYVSLHELLGESQIIGLHCPLTADSINLDYAQSLA 447
            RAG G       A   R G+ +V  P  + H+ AEHA+AL+LA +R++  A    R   +     +G ++           +IG   A  +A FG  ++AYDPY  P +   LG   +S  +LL  +  I +H P T ++  L   ++LA
Sbjct:   71 RAGVGLDNVDVDAATAR-GVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSFDDLLARADFISVHLPKTPETAGLIDKEALA 219          

HSP 2 Score: 35.039 bits (79), Expect = 4.981e-15
Identity = 15/36 (41.67%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  455 QPGAMLINTGRGGLVDTPALINPLKEGQLGYLGLGV 562
            +PG +++N  RGGLVD  AL + ++ G +   GL V
Sbjct:  222 KPGVIIVNAARGGLVDEVALADAVRSGHVRAAGLDV 257          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.464e-15
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:    1 RAGPGPGFTGRPARRQRLGLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHGLTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPY-PNPQVEALGARYVSLHELLGESQIIGLHCPLTADSINLDYAQSLA 447
            RAG G      PA   R G+ +V  P  +  A AEHA+A+++AL R +  A    ++  +      G ++           +IG+  A +    G +LLAYDP+    + + +G   V L  L  E+  I LH P T ++ NL  A++LA
Sbjct:   97 RAGVGVDNIDVPAAT-RQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETANLINAETLA 245          

HSP 2 Score: 35.039 bits (79), Expect = 6.464e-15
Identity = 15/37 (40.54%), Postives = 23/37 (62.16%), Query Frame = 2
Query:  452 MQPGAMLINTGRGGLVDTPALINPLKEGQLGYLGLGV 562
            M+P A +IN  RGG++D  AL+  ++  Q+G   L V
Sbjct:  247 MKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDV 283          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: LDHD_STAAR (D-lactate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=ldhD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.555e-15
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   64 IVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHG-LTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEALGARYVSLHELLGESQIIGLHCPLTADSINL 426
            I  VP+YSP  +AE++V++ L L RR      R +  DF+    +    +           +IGA  AKI AGFG  + AYD YPN  ++ L  +  S+ E + ++ II LH P   +S +L
Sbjct:   95 ISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYK-DSVKEAIKDADIISLHVPANKESYHL 215          

HSP 2 Score: 35.039 bits (79), Expect = 6.555e-15
Identity = 13/31 (41.94%), Postives = 23/31 (74.19%), Query Frame = 2
Query:  449 HMQPGAMLINTGRGGLVDTPALINPLKEGQL 541
            H++ GA+L+N  RG +++TP LI+ + +G L
Sbjct:  223 HVKKGAILVNAARGAVINTPDLIDAVNDGTL 253          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: VANH_ENTFC (D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecium GN=vanH PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.560e-15
Identity = 40/124 (32.26%), Postives = 58/124 (46.77%), Query Frame = 1
Query:   46 QRLGLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHGLTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEALGARYVSLHELLGESQIIGLHCPLTADS 417
            +R+G+ +  V AYSP +VA++ + LIL   R +          DF L    G  L           QIG    + + GFGC++LAY      +  ++   YV   ELL  S I+ LH PL  D+
Sbjct:   91 KRMGITVDNV-AYSPDSVADYTMMLILMAVRNVKSIVRSVEKHDFRLDSDRGKVLSDMTVGVVGTGQIGKAVIERLRGFGCKVLAYS-----RSRSIEVNYVPFDELLQNSDIVTLHVPLNTDT 208          

HSP 2 Score: 41.9726 bits (97), Expect = 6.560e-15
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 2
Query:  452 MQPGAMLINTGRGGLVDTPALINPLKEGQLGYLGLGVNE 568
            M+ GA LINTGRG LVDT  L+  L+ G+LG   L V E
Sbjct:  220 MKQGAFLINTGRGPLVDTYELVKALENGKLGGAALDVLE 258          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.410e-15
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 1
Query:    1 RAGPGPGFTGRPARRQRLGLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHGLTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQ-VEALGARYVSLHELLGESQIIGLHCPLTADSINL 426
            RAG G       A  QR G+ +V  P  +  + AEHA+AL+LA  R++ +A    ++G +      G +L           ++G   AK        +LAYDP+ + +  E +G + V    LL  S +I +H P T ++I L
Sbjct:   69 RAGVGVDNIDINAATQR-GIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIGVKLVDFDTLLASSDVITVHVPRTKETIGL 210          

HSP 2 Score: 36.1946 bits (82), Expect = 8.410e-15
Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = 2
Query:  452 MQPGAMLINTGRGGLVDTPALINPLKEGQLGYLGLGVNEKK 574
            M+ G +++N  RGG+VD  AL   +K G++    L V EK+
Sbjct:  219 MKDGVIVVNAARGGIVDEAALYEAIKAGKVAAAALDVYEKE 259          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: LDHD_STAAN (D-lactate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=ldhD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.107e-14
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   64 IVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHG-LTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEALGARYVSLHELLGESQIIGLHCPLTADSINL 426
            I  VP+YSP  +AE++V++ L L RR      R +  DF+    +    +           +IGA  AKI AGFG  + AYD YPN  ++ L  +  S+ E + ++ II LH P   +S +L
Sbjct:   95 ISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQTHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYK-DSVKEAIKDADIISLHVPANKESYHL 215          

HSP 2 Score: 33.8834 bits (76), Expect = 1.107e-14
Identity = 13/31 (41.94%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  449 HMQPGAMLINTGRGGLVDTPALINPLKEGQL 541
            H++ GA+L+N  RG +++TP LI  + +G L
Sbjct:  223 HVKKGAILVNAARGAVINTPDLIAAVNDGTL 253          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: LDHD_STAAM (D-lactate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ldhD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.107e-14
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   64 IVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHG-LTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEALGARYVSLHELLGESQIIGLHCPLTADSINL 426
            I  VP+YSP  +AE++V++ L L RR      R +  DF+    +    +           +IGA  AKI AGFG  + AYD YPN  ++ L  +  S+ E + ++ II LH P   +S +L
Sbjct:   95 ISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQTHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYK-DSVKEAIKDADIISLHVPANKESYHL 215          

HSP 2 Score: 33.8834 bits (76), Expect = 1.107e-14
Identity = 13/31 (41.94%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  449 HMQPGAMLINTGRGGLVDTPALINPLKEGQL 541
            H++ GA+L+N  RG +++TP LI  + +G L
Sbjct:  223 HVKKGAILVNAARGAVINTPDLIAAVNDGTL 253          
BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: LDHD_STAAW (D-lactate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=ldhD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.438e-14
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   64 IVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLHG-LTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEALGARYVSLHELLGESQIIGLHCPLTADSINL 426
            I  VP+YSP  +AE++V++ L L RR      R +  DF+    +    +           +IGA  AKI AGFG  + AYD YPN  ++ L  +  S+ E + ++ II LH P   +S +L
Sbjct:   95 ISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYK-DSVKEAIKDADIISLHVPANKESYHL 215          

HSP 2 Score: 33.8834 bits (76), Expect = 1.438e-14
Identity = 13/31 (41.94%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  449 HMQPGAMLINTGRGGLVDTPALINPLKEGQL 541
            H++ GA+L+N  RG +++TP LI  + +G L
Sbjct:  223 HVKKGAILVNAARGAVINTPDLIAAVNDGTL 253          
The following BLAST results are available for this feature:
BLAST of EY674792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SERA_MYCBO4.712e-1631.33D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THELI8.057e-1631.82Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
SERA_MYCLE4.981e-1530.67D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_SYNY36.464e-1530.67D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
LDHD_STAAR6.555e-1534.43D-lactate dehydrogenase OS=Staphylococcus aureus (... [more]
VANH_ENTFC6.560e-1532.26D-specific alpha-keto acid dehydrogenase OS=Entero... [more]
SERA_ARCFU8.410e-1530.07D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
LDHD_STAAN1.107e-1434.43D-lactate dehydrogenase OS=Staphylococcus aureus (... [more]
LDHD_STAAM1.107e-1434.43D-lactate dehydrogenase OS=Staphylococcus aureus (... [more]
LDHD_STAAW1.438e-1434.43D-lactate dehydrogenase OS=Staphylococcus aureus (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-E03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674792 ID=EY674792; Name=EY674792; organism=Citrus sinensis; type=EST; length=1035bp
CGTGCGGGTCCGGGTCCGGGATTCACGGGTCGACCTGCCCGCCGCCAACG
CCTGGGCCTCCCTATAGTGCGGGTGCCGGCCTATTCGCCCCATGCGGTGG
CCGAACATGCGGTCGCACTGATCCTGGCCCTCAATCGCCGCCTGCACCGC
GCCTACAACCGTACCCGCGACGGTGACTTCAGCCTGCATGGCCTGACCGG
TTTCGACCTGGTGGGCAAGACCGTCGGCGTGGTCGGCACCGGGCAGATCG
GCGCCACATTCGCCAAGATCATGGCCGGGTTCGGCTGCCAGTTGCTGGCG
TACGATCCTTACCCCAACCCGCAGGTCGAGGCCCTCGGTGCGCGCTATGT
GAGCCTGCATGAGTTGCTGGGCGAGTCGCAGATCATCGGCCTGCATTGCC
CGCTGACGGCGGACAGCATAAACCTGGATTACGCCCAAAGCCTGGCCCCA
TATGCAGCCCGGCGCGATGCTGATAAATACCGGGCGCGGGGGCCTGGTGG
ACACCCCGGCGCTGATTAACCCACTCAAGGAAGGCCAACTCGGCTATCTG
GGGCTGGGAGTGAATGAAAAAAAAGGCCACCCTTGTTTTTCAAAAACACC
TCGGATTTGCCAACTGCAAAACGACGTATTGGGGGGCACTGTTGAATTTC
CCCTAACTTATCTTCATCCTCCCACCAGGCCTTTTTTGATCTCCTAGGCC
TTGGGGGGGGAATTGAATGCAAAAAACCTTTTCCAAATTCACCGGCGAGG
TGCTGGGGGGGAAGGGGCAAAACCTCTCTCTAAAGAATTATTAAGCGGTC
AATATTACCCTCCTATAATACAGGGTGAGGTGCCCGTTAAAATGAAACCA
ACCCCCTATTTTATGAGAAAAAAGTGGACAAAAACCAAATTTTTTCTCTT
TTTAAATTTTGGTAGAAATACCCCACAATAACATACTATGAAAATTATAA
ATAGGACGAATTACCCTGATAGATGACGGGAGGTAATATATTTAATAATT
GTTATTTACCGATGGATAAGACGGGTGAGGGAGTA
back to top