EY674792

Overview
NameEY674792
Unique NameEY674792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1035
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674792 vs. ExPASy Swiss-Prot
Match: LDHD_STRA3 (D-lactate dehydrogenase OS=Streptococcus agalactiae serotype III GN=ldhD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.117e-11
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:   55 GLPIVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTRDGDFSLH-GLTGFDLXXXXXXXXXXXQIGATFAKIMAGFGCQLLAYDPYPNPQVEALGARYVSLHELLGESQIIGLHCPLTADSINL 426
            G+ I  VP+YSP ++AE  V + L L R++       R+ +FS    + G  L           +IG   AKI  GFGC+++ YD Y NP  + +     S+ E + ++ ++ LH P TA++ +L
Sbjct:   91 GIIISNVPSYSPESIAEFTVTIALNLIRKVELIRANVREQNFSWTLPIRGRVLGNMTVAIIGTGRIGLATAKIFKGFGCRVIGYDIYHNPMADGILEYVNSVEEAVEKADLVSLHMPPTAENTHL 215
The following BLAST results are available for this feature:
BLAST of EY674792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
LDHD_STRA34.117e-1132.00D-lactate dehydrogenase OS=Streptococcus agalactia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-E03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674792 ID=EY674792; Name=EY674792; organism=Citrus sinensis; type=EST; length=1035bp
CGTGCGGGTCCGGGTCCGGGATTCACGGGTCGACCTGCCCGCCGCCAACG
CCTGGGCCTCCCTATAGTGCGGGTGCCGGCCTATTCGCCCCATGCGGTGG
CCGAACATGCGGTCGCACTGATCCTGGCCCTCAATCGCCGCCTGCACCGC
GCCTACAACCGTACCCGCGACGGTGACTTCAGCCTGCATGGCCTGACCGG
TTTCGACCTGGTGGGCAAGACCGTCGGCGTGGTCGGCACCGGGCAGATCG
GCGCCACATTCGCCAAGATCATGGCCGGGTTCGGCTGCCAGTTGCTGGCG
TACGATCCTTACCCCAACCCGCAGGTCGAGGCCCTCGGTGCGCGCTATGT
GAGCCTGCATGAGTTGCTGGGCGAGTCGCAGATCATCGGCCTGCATTGCC
CGCTGACGGCGGACAGCATAAACCTGGATTACGCCCAAAGCCTGGCCCCA
TATGCAGCCCGGCGCGATGCTGATAAATACCGGGCGCGGGGGCCTGGTGG
ACACCCCGGCGCTGATTAACCCACTCAAGGAAGGCCAACTCGGCTATCTG
GGGCTGGGAGTGAATGAAAAAAAAGGCCACCCTTGTTTTTCAAAAACACC
TCGGATTTGCCAACTGCAAAACGACGTATTGGGGGGCACTGTTGAATTTC
CCCTAACTTATCTTCATCCTCCCACCAGGCCTTTTTTGATCTCCTAGGCC
TTGGGGGGGGAATTGAATGCAAAAAACCTTTTCCAAATTCACCGGCGAGG
TGCTGGGGGGGAAGGGGCAAAACCTCTCTCTAAAGAATTATTAAGCGGTC
AATATTACCCTCCTATAATACAGGGTGAGGTGCCCGTTAAAATGAAACCA
ACCCCCTATTTTATGAGAAAAAAGTGGACAAAAACCAAATTTTTTCTCTT
TTTAAATTTTGGTAGAAATACCCCACAATAACATACTATGAAAATTATAA
ATAGGACGAATTACCCTGATAGATGACGGGAGGTAATATATTTAATAATT
GTTATTTACCGATGGATAAGACGGGTGAGGGAGTA
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