EY674787

Overview
NameEY674787
Unique NameEY674787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1064
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.853e-28
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    1 EGVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            EG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F
Sbjct:  129 EGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMREMFF 246          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.572e-28
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    1 EGVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            EG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP    +F  ILR+FF   IYDVK++M+ C++L GGL  VA  L++ R +G  HQAGSDSLLT  AF K+R+++F
Sbjct:  129 EGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFF 246          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.584e-28
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 EGVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            EG+D+  FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  IL +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF ++++++F
Sbjct:  129 EGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFF 246          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.584e-28
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 EGVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            EG+D+  FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  IL +FF  +IYDVK++M+ C++L GGL  VA  LD+ R +G+ HQAGSDSLLT  AF ++++++F
Sbjct:  129 EGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFF 246          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.619e-26
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    4 GVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            GVD+  FAEL+M SG+V  + + WVTFH  YDFGYL+K+L+   LP  + +F   +  FF   +YD+K++M FC +LYGGL+++A  L V R VG  HQAGSDSLLT   F K+++ +F
Sbjct:  145 GVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTLRTFIKMKEFFF 261          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.038e-22
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    4 GVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  +EF  IL ++F  N YD+K+IM+   +   GL  +A  L + R +G  HQAGSD+LLT   F +IR  YF
Sbjct:  140 GIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIRSRYF 256          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.383e-16
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 GVDSPLFAELMMSSGLVPPESVSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRF--CQS--LYGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVYF 360
            G+ + +F EL+ +SGL+    ++W+TF S YDFGYL+K +T   LP     F    +  F  + +D+K ++R   C S  L GGL  VA  LDV R  G  HQAGSD+LLT   F KI+  +F
Sbjct:  141 GIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-GVRHQAGSDALLTAATFFKIKKQFF 261          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.738e-12
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   67 VSWVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSL--YGGLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKIRDVY 357
            V +VTF  AYDF Y + IL    LP    EF T +   FG  +YD K +  FC+ L  + GL ++A+ L ++R VG+ H AGSDSL+T   F K++ VY
Sbjct:  145 VEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTALVFIKLKHVY 241          
BLAST of EY674787 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.603e-12
Identity = 42/93 (45.16%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   73 WVTFHSAYDFGYLVKILTRPSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 345
            WVTF  +YD  YL+K LTR  LP    EF   ++   G  +YDVK +   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:  137 WVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQM-RRVGKAHHAGSDSELTARVFTKL 228          
The following BLAST results are available for this feature:
BLAST of EY674787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CNOT7_XENTR3.853e-2854.17CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_DANRE6.572e-2853.33CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT8_MOUSE8.584e-2852.50CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN8.584e-2852.50CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CAF1B_ARATH1.619e-2649.58Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO7.038e-2247.06Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_CAEEL3.383e-1642.28CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH1.738e-1243.43Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH6.603e-1245.16Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674787 ID=EY674787; Name=EY674787; organism=Citrus sinensis; type=EST; length=1064bp
GAAGGCGTTGACTCCCCTTTGTTCGCCGAGTTGATGATGTCGTCGGGACT
CGTCCCCCCCGAATCGGTGAGTTGGGTCACGTTCCACAGCGCGTACGATT
TCGGGTACCTGGTTAAGATCCTCACGCGCCCCAGCTTGCCCAGTGGCCTA
GACGAGTTCTTGACGATCCTCAGGGTGTTTTTCGGTAACAATATTTATGA
CGTCAAACACATTATGCGGTTCTGTCAGAGCTTGTACGGTGGTTTGGACC
GAGTGGCTCGTACGTTGGATGTGAGCCGGGCGGTCGGGAAGTGCCACCAG
GCCGGTTCGGATAGCCTTCTGACCTGGCATGCCTTTCAAAAAATTAGGGA
TGTGTATTTCGTCCATGACCGGACCGGAGAAACATGCCGGCGTATTGTAT
GGACTAGAAGTGTACTAGATTTAAATTTTGGCCAATTATATTAATTTGAT
TTTTTTAAAGTGCCTTTTGCAAATTAATAAGGAATTAAATTGGGGAATTA
AGGAAAATAAATTTCTTTGCATGTAAATTCAAAGGGTAATCCAAAAATGT
ATAAGGTTGAAGGCTCATTATAAGTATGAAAATTTTTGTATTGGGGGGGG
CCGTTTAAGGAGATTCTATTTTAGTTTCCCGTGGGAGGCAAAGAGCAAAG
CTTCTTTCAATTGGGGGGCCCGAATTATATTTTCGTGGGCCTTCTTTTTT
TTATGTTTGGGGGTTGGGGAAAATCCTTGGGGTTTCTCCATTTTAAGCAC
CTTTGGGGTTCGTACCCCCCTCTTTTCTCACAAGGGGAGAATAAATACAG
CAAAAAGCGCACCCCCCCCGTTTACCCCCTTCCCTCACATCTTTACCTCT
CCCTTTGAGTTTGGGCAACGTGGGGTCACCCCCCCCCTTGAAACTGAGTC
TCTTTTGATATGACTGGGTTGGAGGTGGAGGGGGGTGTATATTTGCATAA
GTGATGAGATCTCATATATGCAATTGTGTTGTGGGAGCAAGACGACCATT
GAGCGTACCTCCCACACGCCCCTCTTCTTATCTTTTTATATTTTTTGTTA
TCAGCGTCTTTTTT
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