EY685349

Overview
NameEY685349
Unique NameEY685349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:40..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 2
Query:   86 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ GK   +++  L M  R+D+ RL++IR +RG+RH  GL VRGQ
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   89 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+  +   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER KK +  R  R   GL+VRGQ
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   89 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            + +HI+R+ NT++DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +NR+KD   G    V+   +   LR+DL+ +KK R+++G+RH  GLRVRGQ
Sbjct:   11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQ 136          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 48/129 (37.21%), Postives = 88/129 (68.22%), Query Frame = 2
Query:   83 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            N+DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ GEL   E++ L   V N +++ +PDW LN +++   GK   +V+  LD+++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 46/129 (35.66%), Postives = 90/129 (69.77%), Query Frame = 2
Query:   83 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            N+DFQ+I+R+ N +++G++ +  AL+ +KGIG RL  ++ ++ D+ ++K+ GEL   +L+ L   V   +++ +P+W LN +++   GK   +VS  L++++++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 51/129 (39.53%), Postives = 82/129 (63.57%), Query Frame = 2
Query:   83 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            ++ F++++R+   +VDG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+  +  V+++     +P W  NR+KDY+ G    +V++ L   +R+D+ER KK R+ RG+RH  GL+VRGQ
Sbjct:    2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQ 130          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   83 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD +   G L   E+  L   +       +P W LNRQKD   G+   ++   + +  R+D+  LKK+R +RGLRH  GL+VRGQ
Sbjct:   17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 49/128 (38.28%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   86 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D L  V+ N  +  +P W LNR++D   G+   +    L M +++D+  +KKIR+++G+RH  G +VRGQ
Sbjct:   67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 50/131 (38.17%), Postives = 85/131 (64.89%), Query Frame = 2
Query:   77 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            ++ + F++I+R+   +VDG  K+ +AL  IKGIG   A I+ +K ++D +KR GE+S  ++  +  ++ N    + P+W  NRQKDY+ G    +V++ L   +R+D+ER ++ R+ RG+RH  GL+VRGQ
Sbjct:    1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQ 131          
BLAST of EY685349 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = 2
Query:   83 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 469
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D+++  V      ++P+W  N QKD+  G+ +  + N L M  R D+ R+KKI  +RG+RH  G +VRGQ
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139          
The following BLAST results are available for this feature:
BLAST of EY685349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_PYRKO3.814e-2341.4130S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS18_ENCCU6.506e-2341.7340S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_METTP1.449e-2242.5230S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_THEVO2.472e-2237.2130S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_THEAC2.472e-2235.6630S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_SULSO4.217e-2239.5330S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS13_METAC9.394e-2237.9830S ribosomal protein S13P OS=Methanosarcina aceti... [more]
RS13_UNCMA1.227e-2138.2830S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_SULAC2.093e-2138.1730S ribosomal protein S13P OS=Sulfolobus acidocald... [more]
RS13_NATPD2.093e-2138.7630S ribosomal protein S13P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-018-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685349 ID=EY685349; Name=EY685349; organism=Citrus sinensis; type=EST; length=658bp
CTTGCTGCAGCTTCATCTGTCGCCGAAGAGCCTCTCTTCTCTTCATCATC
AATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGCAC
ATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATGTT
TGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTT
GCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTGCT
GCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAA
AATCCCTGATTGGTTCTTGAACAGACAGAAGGATTACAAGGATGGAAAGT
ATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGACTTG
GAGCGTCTGAAGAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGGGG
TCTTCGTGTCCGTGGACAACACACCAAGACCACCGGCCGTCGTGGAAAGA
CTGTTGGTGTCTCCAAGAAGCGTTGAGCTGTCCTTTATCAATGTTTTGAA
CAATCTATACACATGTTCAGGAAGAATTTGGACTTGCTATTGCTGAACAT
TTGCATCAGACAATATTAAATTTAATTTTCTTTTTCTTTGGAAAAAAAAA
AAAAAAAA
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