EY685306

Overview
NameEY685306
Unique NameEY685306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1854 contig Csv1_Contig1854:281..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47
Identity = 92/134 (68.66%), Postives = 101/134 (75.37%), Query Frame = 2
Query:   14 NTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  +     SIGKNV+PI VKFT K  YD
Sbjct:    8 NMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.218e-46
Identity = 90/134 (67.16%), Postives = 102/134 (76.12%), Query Frame = 2
Query:   14 NTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  V     SIG+N++P++VKF  K  YD
Sbjct:    8 NMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKFMNKATYD 141          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.218e-46
Identity = 91/132 (68.94%), Postives = 102/132 (77.27%), Query Frame = 2
Query:   17 TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:    7 TPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.218e-46
Identity = 87/130 (66.92%), Postives = 103/130 (79.23%), Query Frame = 2
Query:   23 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MRQG NLL LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEKVNPGRQ V  N R IG+N  P ++KF+G   YD
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.453e-45
Identity = 89/132 (67.42%), Postives = 101/132 (76.52%), Query Frame = 2
Query:   17 TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:    7 TPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 7.136e-45
Identity = 87/133 (65.41%), Postives = 103/133 (77.44%), Query Frame = 2
Query:   26 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYDL 415
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM +G NLL LARKEQCLALGT+LR+K+K K   Y+ YRV+P+GEVQYLHP DGV+PEKVN GR+  G   R IG+N  P+ +KF+GK  Y++
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.488e-42
Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = 2
Query:   23 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVY 409
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M +G NLL  ARKEQ LALGT+LR+K+K K   Y+ YR FP  +V YLHPKDGV+PEKVN GR   G   R IG+N +P  +KFTGKQ Y
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTGKQPY 140          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.787e-41
Identity = 79/131 (60.31%), Postives = 100/131 (76.34%), Query Frame = 2
Query:   20 PSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVY 409
            PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI  ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G    +IGKN++P EVKFT K ++
Sbjct:   10 PSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFTHKTIF 140          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_NOSS8 (Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC 8009) GN=psaD PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.252e-41
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 2
Query:   23 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            +P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M QG NLL LARKEQ +ALG +LR K+KI  Y+ YR+FPNGE  ++HP DGV+PEKVN GR+ V    R IG+N SP ++KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFSGKYTYD 137          
BLAST of EY685306 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.819e-40
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 2
Query:   26 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 412
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK+ YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
The following BLAST results are available for this feature:
BLAST of EY685306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_PORPU5.838e-4768.66Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_PORYE2.218e-4667.16Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_ODOSI2.218e-4668.94Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_MASLA2.218e-4666.92Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_SKECO2.453e-4567.42Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_SYNY37.136e-4565.41Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_SYNP61.488e-4262.88Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CYACA4.787e-4160.31Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_NOSS86.252e-4163.36Photosystem I reaction center subunit II OS=Nostoc... [more]
PSAD_THEVL1.819e-4060.77Photosystem I reaction center subunit II OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-013-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685306 ID=EY685306; Name=EY685306; organism=Citrus sinensis; type=EST; length=490bp
CGGACGCGTGGGCAACACCCCTTCCCCAATCTTCGGAGGAAGCACTGGGG
GATTGTTGAGAAAGGCCCAAGTTGAAGAATTCTATGTCATCACATGGGAG
TCGCCAAAGGAACAAATCTTTGAGATGCCGACTGGTGGAGCTGCCATTAT
GAGGCAAGGTCCTAACTTGCTTAAGTTGGCTAGGAAAGAACAGTGCTTGG
CTCTTGGTACTAGATTGAGATCAAAGTACAAGATCAAGTACCAGTTTTAC
AGGGTCTTTCCTAATGGTGAGGTTCAATATCTTCACCCCAAGGATGGAGT
TTATCCTGAAAAAGTGAACCCTGGTCGCCAGGGAGTGGGAGTGAATTACA
GATCAATTGGGAAGAATGTCAGTCCCATCGAGGTTAAGTTCACTGGGAAG
CAAGTCTATGACTTGTGAGATGCAGATGATTGTTTAATCTCTTGTTTTGT
GTGATTGTAGATTCTACTGTTCTTTAAAAAAAAAAAAAAA
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