EY673881

Overview
NameEY673881
Unique NameEY673881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKY 606
            RY+V ++RRREG+T+Y  R RLI   K        R VVR  N +IT Q+I A + GD  L +  + EL  YG +    N  AAY TGLL  +++L +                 Y+            +LD+GL   + G+RV+ ALKG +D G+D+PHS + F     D  ++  EV R Y
Sbjct:    6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 62/162 (38.27%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSE 543
            RY V ++RR EGKTDY  R+ L++       TP  R VVR TN+ I  Q++   + GD  L +AY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF ALKG++D GLD+P+ E
Sbjct:    6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.558e-19
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAY 633
            RY V ++RRREGKTDY  R +LI  ++        R VVR TN+ I  Q+I A + GD  L +A + EL  YG +   +N  AAY TG+L A                V+A   D+            A+LD+GL + T G +VF ALKG+++ GLD+PH E+      +             + G H+AAY
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAY 151          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.558e-19
Identity = 70/217 (32.26%), Postives = 97/217 (44.70%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEE------DPKKYQSHFCEI 690
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+++    GD  LASA++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF   +G++D GLDIPH++   A + +               G H+A Y   L E       D      HF E+
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTR-------------GAHIAEYDEQLEEPLYSGDFDAADLPEHFDEL 176          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.657e-19
Identity = 71/219 (32.42%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+   Y+VKY+RRREGKT+Y  R   +  +         R VVR TNK I AQI   +  GD+++ +A++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F A+KG++D GL IP                D  +    I G H+A+Y + L  E+P+ ++  F + L++
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVG--------------DLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLER 173          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.657e-19
Identity = 67/214 (31.31%), Postives = 100/214 (46.73%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK + AQI+ A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF  +KG +D G+++PH E             +     + I G HVA Y + L EE P+ Y++ F   L++
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQR 173          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.657e-19
Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSE 543
            RY V+++RRREG+TDY  R RLI   +N       R VVR TN+ I  Q+I+A + GD  L    + EL  +G +  L N  AAY TG+L A R  K     A YEG +                      D+GL   +TG RVF A+KG++D G D+P  E
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEGGI---------------------ADIGLQVASTGARVFAAIKGAVDAGFDVPVGE 134          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.471e-19
Identity = 68/218 (31.19%), Postives = 104/218 (47.71%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK                          R    A+LD+G  K+T GN ++  LKG+LD GL+IPHSE       +             I G H+A Y + +++E+ + Y+  F   LK+
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAK-MLKENEELYKKQFSRYLKE 172          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.533e-19
Identity = 74/219 (33.79%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ VF  LKG++D GL++PHS + F            E +R  I G H+A Y R L E+D +K++  F   L+K
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEK 174          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.920e-19
Identity = 74/219 (33.79%), Postives = 103/219 (47.03%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR +     AQI+     GD  + SA+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF  LKG++D GL++PHSE           ++  E +R  I G H+A Y + L EED  KY+  F   L K
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--ITGEHIANYAKALKEEDEGKYRKQFSSYLVK 174          
The following BLAST results are available for this feature:
BLAST of EY673881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RL18_METTP6.993e-2035.5250S ribosomal protein L18P OS=Methanosaeta thermop... [more]
RL18_METMJ6.993e-2038.2750S ribosomal protein L18P OS=Methanoculleus maris... [more]
RL18_METPE1.558e-1935.4250S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_HALMA1.558e-1932.2650S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_SULTO2.657e-1932.4250S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_PYRCJ2.657e-1931.3150S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]
RL18_METLZ2.657e-1938.8950S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_NANEQ3.471e-1931.1950S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_PYRAB4.533e-1933.7950S ribosomal protein L18P OS=Pyrococcus abyssi GN... [more]
RL18_THEON5.920e-1933.7950S ribosomal protein L18P OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673881 ID=EY673881; Name=EY673881; organism=Citrus sinensis; type=EST; length=924bp
CTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCTTA
CTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGACTG
ACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACAAC
ACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGACATCACTGC
ACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGCTT
ATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATTAT
GCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAAAT
GCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGCAACAGGAGAGG
ACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGCTC
GATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCT
TAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAGAT
TTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTGAAGTTCACCGT
AAATACATCTATGGTGGTCATGTTGCTGCCTACATGAGGACTTTGATGGA
AGAAGACCCAAAAAAGTACCAGTCTCACTTTTGTGAAATACTCAAAAAAA
GGATTGGAGGTGATAACCTTGGAAAATTGGACAAGAAGGACCTGGCTGCC
CTCCGGGCCAACCCTAACCCAAAAAAATCTGAAAAAAAACCCCCCCGCCA
AACCAAAAAAGGACAACCGGAAAAAAACTTTACTAAAAGGAAAGGGAAAC
CCGGGTTATTTGAAAAGGTTGAAAAACCCCCCCATGGGGCGTGAAAAAAA
AAAAAAAAAAAAATAAGGGAGGGG
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