EY673881

Overview
NameEY673881
Unique NameEY673881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.010e-18
Identity = 72/215 (33.49%), Postives = 102/215 (47.44%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            RY+V  +RRREGKT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF A+K + D GL +P  E+      +             I G H+A++ + L E  P+ Y+  F + + +
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISR 174          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.319e-18
Identity = 67/218 (30.73%), Postives = 96/218 (44.04%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+   Y+VKY+RRREGKT+Y  R   +    +       R VVR TNK +  Q +     GDI +A+A++ EL ++G +    N  A Y TG L   R        A+  G   A+                   D+GL   T G R+F  LKG +D G+ +P                D  V+   + G H+A Y + L +EDP KY+  F   L +
Sbjct:    2 AHGPNYKVKYRRRREGKTNYYRRYTYVLNRSD-------RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLR--------AKKAGMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLAR 172          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 68/208 (32.69%), Postives = 101/208 (48.56%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHF 681
            RY+V  KRRREGKT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF A+KG+LD GL IP  +       +D +          + G H+A Y + L E +P+ ++  F
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRF 167          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 73/215 (33.95%), Postives = 103/215 (47.91%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            RY+V ++RRREGKT+Y  R++L+        + K R VVR +     AQII  +  GD  + SA+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF  LKG++D GL++PHSE+ F            E +R  I G HVA Y + L +ED   Y+  F   L K
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQFGGYLVK 174          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 72/219 (32.88%), Postives = 104/219 (47.49%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ +F  LKG++D GL++PHS + F            E +R  I G H+A Y R L E+D  +++  F   L+K
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEK 174          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.250e-18
Identity = 74/219 (33.79%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT+Y  R++L+        + K R VVR T     AQI+     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL   T G+ +F  LKG++D GL++PHSE           ++  E +R  I G H+A Y + L EED   Y+  F   L K
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVK 174          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.938e-18
Identity = 70/219 (31.96%), Postives = 105/219 (47.95%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR T     AQI+  +  GD  + SA+  EL R +G +    N  +AY  GLL+  + L         E  +E                  A+LD+GL   T G+ +F  LKG++D GL++PHSE+ + G              + I G H+A Y + +++ED + Y+  F   L K
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAK-MLKEDDENYKKQFGGYLVK 173          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.837e-18
Identity = 70/215 (32.56%), Postives = 102/215 (47.44%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            RY+V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q+I  +  GD V+A+A++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF A+K + D GL++P                D       I G H+A+Y  +L  E+P++YQ  F ++L++
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVG--------------DVVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLER 173          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.011e-18
Identity = 74/218 (33.94%), Postives = 107/218 (49.08%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKK---YQSHFCEILKK 699
            RY+V ++RRREGKTDY  R++LI   K        R VVR T+  + AQI+     GD VLA+A + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+ ALKG++D GL++P SE  F          D  +  ++I G   + Y  T  E++  K     +HF E+  K
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLIVSRKP-------RLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPS--------DDRIRGEHIAGNTASKY--TQYEKNGLKAADLPAHFDEVKGK 180          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.545e-18
Identity = 72/219 (32.88%), Postives = 103/219 (47.03%), Query Frame = 1
Query:   46 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL     G+ VF  LKG++D GL++PHS + F    +             I G H+A Y + L E+D +K++  F   L K
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVK 174          
The following BLAST results are available for this feature:
BLAST of EY673881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RL18_STAMF1.010e-1833.4950S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_METS51.319e-1830.7350S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_THEPD1.722e-1832.6950S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_THEGJ1.722e-1833.9550S ribosomal protein L18P OS=Thermococcus gammato... [more]
RL18_PYRHO1.722e-1832.8850S ribosomal protein L18P OS=Pyrococcus horikoshi... [more]
RL18_PYRKO2.250e-1833.7950S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_THESM2.938e-1831.9650S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_IGNH43.837e-1832.5650S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_UNCMA5.011e-1833.9450S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_PYRFU6.545e-1832.8850S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673881 ID=EY673881; Name=EY673881; organism=Citrus sinensis; type=EST; length=924bp
CTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCTTA
CTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGACTG
ACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACAAC
ACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGACATCACTGC
ACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGCTT
ATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATTAT
GCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAAAT
GCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGCAACAGGAGAGG
ACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGCTC
GATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCT
TAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAGAT
TTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTGAAGTTCACCGT
AAATACATCTATGGTGGTCATGTTGCTGCCTACATGAGGACTTTGATGGA
AGAAGACCCAAAAAAGTACCAGTCTCACTTTTGTGAAATACTCAAAAAAA
GGATTGGAGGTGATAACCTTGGAAAATTGGACAAGAAGGACCTGGCTGCC
CTCCGGGCCAACCCTAACCCAAAAAAATCTGAAAAAAAACCCCCCCGCCA
AACCAAAAAAGGACAACCGGAAAAAAACTTTACTAAAAGGAAAGGGAAAC
CCGGGTTATTTGAAAAGGTTGAAAAACCCCCCCATGGGGCGTGAAAAAAA
AAAAAAAAAAAAATAAGGGAGGGG
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