EY673881

Overview
NameEY673881
Unique NameEY673881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.545e-18
Identity = 66/220 (30.00%), Postives = 97/220 (44.09%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEE------DPKKYQSHFCEILKK 699
            RY V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ++     GD  +ASA + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF   +G +D GL++PH+E  FA + +               G H+A Y   L +       D  +   HF E+ ++
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQRTR-------------GAHIAEYAEQLEDGLYSGDFDATELPDHFDEVRER 179          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.904e-17
Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRF-----------AGFSKDSKQL 582
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+I+ +  GDI  +SA ++EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+ ALKG +D G +IP S + F           AG+ ++S  L
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDERIRGEHIAGYREESSDL 158          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.487e-17
Identity = 65/208 (31.25%), Postives = 93/208 (44.71%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHF 681
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N+ + AQ+I+    GD    +A +  L  YG E    N  +AY TG L   R ++               G D             A+LD+GL   T GN+VF   +G++D G+ IPH+E   A +S++              G H+AAY     + D   Y S F
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRNR-------------GEHIAAYAE---QRDEPLYNSDF 164          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.487e-17
Identity = 66/218 (30.28%), Postives = 96/218 (44.04%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEE------DPKKYQSHFCEIL 693
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+++    GD   A+A + EL  YG +    N  +AY TG L   R +     DA  +                      A+LD+GL   T GN+ F   +G++D GL+IPH++   A +S+               G H+AAY   L E       D      HF ++L
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAV-----DAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTR-------------GEHIAAYAEQLDEPLYSGDFDAADLPEHFDDVL 177          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.242e-17
Identity = 63/206 (30.58%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQS 675
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+I+ +  GDI  +SA + EL +YG      N  AAY TGLL   + LK       YEG +                     LD+GL  ++ G+RV+ ALKG +D G ++P S + F    +             I G H+A Y R    + P+++++
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEGGI---------------------LDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVFPSDER-------------IRGEHIAEY-REESSDLPEQFEA 164          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.237e-17
Identity = 64/206 (31.07%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQS 675
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+++ +  GDI  +SA + EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+ ALKG +D G +IP S   F    +             I G H+A Y R    + P+++++
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVFPSDER-------------IRGEHIAEY-REESSDLPEQFEA 164          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.612e-16
Identity = 66/214 (30.84%), Postives = 92/214 (42.99%), Query Frame = 1
Query:   61 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPKKYQSHFCEILKK 699
            Y+VK +RRREGKT+Y  R   +   +        RF+VR TNK +  QI      GDI++ASA++ EL  ++G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF  +KG++D GL IP                D  +    I G H+A Y   L  E+   Y   F   L++
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQR 176          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 71/230 (30.87%), Postives = 102/230 (44.35%), Query Frame = 1
Query:   58 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEE---------------DPKKYQSHFCEILKK 699
            RY+V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD+++A+A+++EL  R+G + G  N +AAY TGLL A   L+ LE   EY                       A+ D+GL +   G  VF A+K + D GL +P                +     + I G H+A+Y + L E                 P+   SHF E+  K
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAA---LRALEKGVEY-----------------------AVPDIGLHRPVKGALVFAAIKAANDAGLKVPMGG-------------EVAPSEERIRGEHIASYAKILRENGLLEKRFSRYLANGLQPEDLPSHFEEVKNK 189          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.591e-16
Identity = 62/201 (30.85%), Postives = 94/201 (46.77%), Query Frame = 1
Query:   61 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEEDPK 663
            Y+V++KRRREGKT+Y  R +L++ DK        R VVR T+     Q++     GD  L SA +  L  +G      N +AAY TG L  ++ L                 E Y             +LD+G+  +  G +++  LKG+LD GL IPH++   +   +DS+          I G H+A Y  + M++D K
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHND---SILPEDSR----------IRGEHIAQYAES-MDDDEK 160          
BLAST of EY673881 vs. ExPASy Swiss-Prot
Match: RL18_SULIN (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16
Identity = 70/231 (30.30%), Postives = 101/231 (43.72%), Query Frame = 1
Query:   61 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMRTLMEE-----------------DPKKYQSHFCEILKK 699
            Y++K++RRREGKT+Y  R   +        + + RF+VR TNK +  QI      GDI++ASA++ EL  ++  +    N  +AY TG L A R +K        +G  E                   + D+GL   + GN+VF A+KG++D GL IP                D  +    I G H+A Y   L  E                 +P+   SHF EIL K
Sbjct:    7 YKIKHRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNK 190          
The following BLAST results are available for this feature:
BLAST of EY673881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RL18_NATPD6.545e-1830.0050S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_METAC1.904e-1733.3350S ribosomal protein L18P OS=Methanosarcina aceti... [more]
RL18_HALWD2.487e-1731.2550S ribosomal protein L18P OS=Haloquadratum walsby... [more]
RL18_HALLT2.487e-1730.2850S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_METBF4.242e-1730.5850S ribosomal protein L18P OS=Methanosarcina barke... [more]
RL18_METMA7.237e-1731.0750S ribosomal protein L18P OS=Methanosarcina mazei... [more]
RL18_SULSO1.612e-1630.8450S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_DESK12.750e-1630.8750S ribosomal protein L18P OS=Desulfurococcus kamc... [more]
RL18_METST3.591e-1630.8550S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_SULIN6.126e-1630.3050S ribosomal protein L18P OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673881 ID=EY673881; Name=EY673881; organism=Citrus sinensis; type=EST; length=924bp
CTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAAGCTTA
CTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAAGACTG
ACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGTACAAC
ACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGACATCACTGC
ACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATCTGCTT
ATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTAATTAT
GCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTGAAAAT
GCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGCAACAGGAGAGG
ACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCCTGCTC
GATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCT
TAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAAGAGAT
TTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTGAAGTTCACCGT
AAATACATCTATGGTGGTCATGTTGCTGCCTACATGAGGACTTTGATGGA
AGAAGACCCAAAAAAGTACCAGTCTCACTTTTGTGAAATACTCAAAAAAA
GGATTGGAGGTGATAACCTTGGAAAATTGGACAAGAAGGACCTGGCTGCC
CTCCGGGCCAACCCTAACCCAAAAAAATCTGAAAAAAAACCCCCCCGCCA
AACCAAAAAAGGACAACCGGAAAAAAACTTTACTAAAAGGAAAGGGAAAC
CCGGGTTATTTGAAAAGGTTGAAAAACCCCCCCATGGGGCGTGAAAAAAA
AAAAAAAAAAAAATAAGGGAGGGG
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