EY673880 | Citrus Genome Database

Overview


Name	EY673880
Unique Name	EY673880
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	795

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOL6 (Malate dehydrogenase OS=Escherichia coli O6 GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECODH (Malate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECOBW (Malate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECO8A (Malate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQSAL-EGM----LDTLKKDIALGEEFVN 311

[Close]

BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ECO81 (Malate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=mdh PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 2

Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311

The following BLAST results are available for this feature:

BLAST of EY673880 vs. ExPASy Swiss-Prot

BLAST of EY673880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154


Match Name	E-value	Identity	Description
MDH_ECOSE	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli (strain S...	[more]
MDH_ECOLI	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli (strain K...	[more]
MDH_ECOLC	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli (strain A...	[more]
MDH_ECOL6	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli O6 GN=mdh...	[more]
MDH_ECOK1	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli O1:K1 / A...	[more]
MDH_ECOHS	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli O9:H4 (st...	[more]
MDH_ECODH	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli (strain K...	[more]
MDH_ECOBW	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli (strain K...	[more]
MDH_ECO8A	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli O8 (strai...	[more]
MDH_ECO81	1.030e-42	51.89	Malate dehydrogenase OS=Escherichia coli O81 (stra...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-102-004-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY673880 ID=EY673880; Name=EY673880; organism=Citrus sinensis; type=EST; length=795bp
TTTCAAGAAAGTTGGCACTTATGATCCAAAGCGACTTTTGGGAGTCACAA
TGCTTGATGTTGTTCGAGCCAATACTTTTGTGGCTGAGGTCTTGGGTCTT
GACCCCAGGGAAGTTGATGTTCCAGTTGTGGGAGGTCATGCAGGGGTTAC
TATTTTACCTCTTTTATCTCAGGTTAAACCATCATGCTCTCTCACCCCTA
CAGAAATTGACTACTTGACAGATCGTATCCAGAATGGTGGTACAGAAGTA
GTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATGC
TGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCCG
GTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTTC
TTTGCATCCAAAGTACGGCTTGACCGTGCTGGAATTGAGGAAATTTACTC
ACTTGGCCCCTTGAATGGATATGAAAAGGGCTGGTTGGGAAAAGGCAAAA
AAAGAATTAACCGGGAAACCATTTCAAAAGGAATTCGTTTTTGCCGGGAA
ATGATAAACAAACCCCCTGGGGGGAAAAAAGGGAAAATGGGTGGGGGTTT
TTGGTTTTTGCCCCCAATTTTCCACCAAAATATAGTTCCCCCAAAAAAAA
AAAGGGGGGGGTTTCTCTTTTTTCCCCCAGACCAAGATTAAATTATCTTT
TATTAACAAAAAAAAAAACCAAAAAGATTTCCCCTATTAGAGGGGGGGGG
GGGAGAGTGTGGAATATTTCTTAAGATTATCTTTGTGGTAAGGAA