EY673880

Overview
NameEY673880
Unique NameEY673880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_VIBSL (Malate dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 93/181 (51.38%), Postives = 118/181 (65.19%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCR 547
            KK G YD +RL G+T LDV+R+ TFVAE+   DP ++ VPV+GGH+GVTILPLLSQV+     T  EI  LT RIQN GTEVVEAK G GSATLSM  AA +F  A ++ L+G+  VIECAYV       PFFA  V+L + G E I S G L+ +E+  L    + +N + I  G+ F +
Sbjct:  133 KKAGVYDKRRLFGITTLDVIRSETFVAELKDKDPGDIRVPVIGGHSGVTILPLLSQVE-GVEFTDEEIAALTTRIQNAGTEVVEAKAGGGSATLSMGQAACRFGLALVKALQGEENVIECAYVEGEGEHAPFFAQPVKLGKEGAEAILSYGELSDFERNALDSMLETLNGD-IEIGVEFAK 311          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 95/185 (51.35%), Postives = 123/185 (66.49%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV    S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L ++G+EE  S+G L+ +E+  L +G      +T+ K I    E +N
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVL-GVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKSGVEERKSIGTLSAFEQNAL-EGM----LDTLKKDIALGEEFVN 311          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_SALNS (Malate dehydrogenase OS=Salmonella newport (strain SL254) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 94/185 (50.81%), Postives = 121/185 (65.41%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L         +T+ K I+   + IN
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKRPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD-----AMLDTLKKDIQLGEDFIN 311          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ESCF3 (Malate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 88/161 (54.66%), Postives = 113/161 (70.19%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWL 487
            KK G YD  +L GVT LD++R+NTFVAE+ G  P E++VPV+GGH+GVTILPLLSQ+ P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPDEIEVPVIGGHSGVTILPLLSQI-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGKLSAFEQNAL 292          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 2
Query:    2 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREM 553
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  TE  +F++ + L + G+E+   +G +  +E+  + +    + + +I KG  F + M
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPEL-KASIKKGEDFVKNM 337          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_PECCP (Malate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.679e-42
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWL 487
            KK G YD  +L GVT LD++R+NTFVAE+ G  P++++VPV+GGH+GVTILPLLSQV P  S +  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G++GV+ECAYV S      FFA  V L + G+ E   +G L+ +E+  L
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPQDINVPVIGGHSGVTILPLLSQV-PGISFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGESGVVECAYVESDGKHARFFAQPVLLGKDGVVERKDIGTLSAFEQNAL 292          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.679e-42
Identity = 94/181 (51.93%), Postives = 121/181 (66.85%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYE----KGWLGKGKKRI--NRETISK 529
            KK G YD  +L GVT LD++R+NTFVAE+ G  P +++VPV+GGH+GVTILPLLSQ+ P  S +  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + GIEE  S+G L+ +E    +G L   KK I    E +SK
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKSPSDIEVPVIGGHSGVTILPLLSQI-PGVSFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGEHARFFSQPLLLGKNGIEERQSIGKLSAFEQQAMEGMLDTLKKDITLGEEFVSK 312          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.679e-42
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 2
Query:    2 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREM 553
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  TE  +F++ + L + GIE+   +G ++ +E+  +      + + +I KG  F + +
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPEL-KASIKKGEDFVKTL 337          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 6.679e-42
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 2
Query:    2 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREM 553
            FKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI+PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  TE  +F++ + L + GIE+   +G ++ +E+  +      + + +I KG  F + +
Sbjct:  155 FKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPEL-KASIKKGEDFVKTL 337          
BLAST of EY673880 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 8.723e-42
Identity = 94/185 (50.81%), Postives = 121/185 (65.41%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLDRAGIEEIYSLGPLNGYEKGWLGKGKKRINRETISKGIRFCREMIN 559
            KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQ+ P  S T  E   LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV        FF+  + L + G+EE  S+G L+ +E+  L         +T+ K I+   + IN
Sbjct:  133 KKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKLPTEVEVPVIGGHSGVTILPLLSQI-PGVSFTEQEAAELTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQHSLD-----AMLDTLKKDIQLGEDFIN 311          
The following BLAST results are available for this feature:
BLAST of EY673880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_VIBSL5.114e-4251.38Malate dehydrogenase OS=Vibrio splendidus (strain ... [more]
MDH_SHIDS5.114e-4251.35Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SALNS5.114e-4250.81Malate dehydrogenase OS=Salmonella newport (strain... [more]
MDH_ESCF35.114e-4254.66Malate dehydrogenase OS=Escherichia fergusonii (st... [more]
MDHM_MOUSE5.114e-4246.74Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDH_PECCP6.679e-4254.66Malate dehydrogenase OS=Pectobacterium carotovorum... [more]
MDH_ENT386.679e-4251.93Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDHM_PONAB6.679e-4246.74Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_HUMAN6.679e-4246.74Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDH_SALTY8.723e-4250.81Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673880 ID=EY673880; Name=EY673880; organism=Citrus sinensis; type=EST; length=795bp
TTTCAAGAAAGTTGGCACTTATGATCCAAAGCGACTTTTGGGAGTCACAA
TGCTTGATGTTGTTCGAGCCAATACTTTTGTGGCTGAGGTCTTGGGTCTT
GACCCCAGGGAAGTTGATGTTCCAGTTGTGGGAGGTCATGCAGGGGTTAC
TATTTTACCTCTTTTATCTCAGGTTAAACCATCATGCTCTCTCACCCCTA
CAGAAATTGACTACTTGACAGATCGTATCCAGAATGGTGGTACAGAAGTA
GTTGAGGCAAAAACTGGAGCTGGTTCGGCCACTCTATCGATGGCATATGC
TGCTGCCAAGTTTGCCGATGCTTGTCTCCGAGGCTTGAGGGGGGATGCCG
GTGTTATTGAGTGTGCATACGTGGCTTCTACGGTGACTGAACTCCCTTTC
TTTGCATCCAAAGTACGGCTTGACCGTGCTGGAATTGAGGAAATTTACTC
ACTTGGCCCCTTGAATGGATATGAAAAGGGCTGGTTGGGAAAAGGCAAAA
AAAGAATTAACCGGGAAACCATTTCAAAAGGAATTCGTTTTTGCCGGGAA
ATGATAAACAAACCCCCTGGGGGGAAAAAAGGGAAAATGGGTGGGGGTTT
TTGGTTTTTGCCCCCAATTTTCCACCAAAATATAGTTCCCCCAAAAAAAA
AAAGGGGGGGGTTTCTCTTTTTTCCCCCAGACCAAGATTAAATTATCTTT
TATTAACAAAAAAAAAAACCAAAAAGATTTCCCCTATTAGAGGGGGGGGG
GGGAGAGTGTGGAATATTTCTTAAGATTATCTTTGTGGTAAGGAA
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