EY703481

Overview
NameEY703481
Unique NameEY703481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.830e-21
Identity = 71/158 (44.94%), Postives = 85/158 (53.80%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSRNELSNG-GAFSLRKTGTCFFFLRYPVVPPGKI-------KFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            MATST AL+S+F G+ +      NELS   GA   R              P G I        +LG     PP  L    P    + T  GLS DPETFA+NREL+   ++WAMLGALGCV PELLA+NGVKFG+  W K G +I   GGL  LG P+
Sbjct:    1 MATSTAALTSTFSGQQLKPV---NELSRKVGAGEARVQ----MMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTA-GLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPS 150          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.355e-20
Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSRNELS-----NGGAFSLRKTGTCFFFLRYPVVPPG------KIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            MA S +  SS+F G+       R+EL      + G FS+R+T           VP        + KFLG    + P  L    P    + T  GLS DPETFA+NREL+   ++WAMLGALGC+FPELL++NGV+FG+  W K G +I + GGL  LG PN
Sbjct:    1 MAASAIQ-SSAFAGQTA--LKQRDELVRKVGVSDGRFSMRRT--------VKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTA-GLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPN 149          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.355e-20
Identity = 68/160 (42.50%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSRNELS------NGGAFSLRKT----GTCFFFLRYPVVPPGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            MATS +   S+F G+        NEL        GG  S+R+T     T  ++       P + K+LG    + P  L    P    + T  GLS DPETFA+NREL+    +WAMLGALGCVFPE+L++NGVKFG+  W K G +I + GGL  LG PN
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWY------GPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTA-GLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.382e-20
Identity = 67/160 (41.88%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSRNELSNGGAFSLRKTGTCF--FFLRYPV--------VPPGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            MAT++   SSS  G+ + L P +NEL       ++K GT      +R  V          P + K+LG      P  L    P    + T   +S DPETFA+NREL+    +WAMLGALGCVFPELLA+NG+KFG+  W K G +I + GGL   G PN
Sbjct:    1 MATASAIQSSSLAGQTL-LRPQQNEL-------VKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTA-AVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPN 151          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.382e-20
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  204 PGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            P  +K+LG      P  L    P    + T  GLS DPETFA+NREL+   ++WAMLGALGCVFPELL++NGVKFG+  W K G +I + GGL  LG P+
Sbjct:   15 PDGVKYLGPFSGESPSYLTGEFPGDYGWDTA-GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS 113          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.723e-20
Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSR--NELSNGGAFSLRKTGTCFFFLRYPVVPPGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            MAT  +   S+FVG+AV  + +    ++ N G   +    T     +       + K+LG    + P  L    P    + T  GLS DPETFARNREL+    +WAMLGALGCVFPE+L++NGVKFG+  W K G +I + GGL  LG PN
Sbjct:    1 MATCAIQ-QSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTA-GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPN 150          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.762e-20
Identity = 62/146 (42.47%), Postives = 83/146 (56.85%), Query Frame = 3
Query:   54 MATSTMALSS-SFVGKAVNLAPSRNELSNGGAFSLRKTGTCFFFLRY--PVVPPGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL 482
            MA +TMA++S + VGK    A    ++   G  ++RKT       R   P     ++ +LG +   PP  L    P    + T  GLS DPETFA+NREL+    +WA+   LGCVFPELLA+NGVKFG+G W K G +I + GGL
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTE-GLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGL 142          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.762e-20
Identity = 53/100 (53.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  204 PGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            P + K+LG    + P  L    P    + T  GLS DPETFARNREL+   ++WAMLGALGC FPELL +NGVKFG+  W K G +I   GGL  LG PN
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTA-GLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPN 150          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.175e-19
Identity = 68/157 (43.31%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSRNELSN------GGAFSLRKT-GTCFFFLRYPVVPPGKIKFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            MATS +   S+F G+      S+NEL        GG  ++R+T  +    + Y    P   K+LG    + P  L    P    + T  GLS DPETFARNREL+    +WAMLGALGCVFPE+L++NGV FG+  W K G +I + GGL  LG PN
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRP---KYLGPFSEQTPSYLTGEFPGDYGWDTA-GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPN 150          
BLAST of EY703481 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  216 KFLGSILWRPPKLLDW*VPW*LPFGTLLGLSPDPETFARNRELKFFPAKWAMLGALGCVFPELLAQNGVKFGKGRWLKVGPKILTRGGL-ILGKPN 500
            K+LG    + P  L    P    + T  GLS DPETFARNREL+    +WAMLGALGCVFPE+L++NGV FG+  W K G +I + GGL  LG PN
Sbjct:   28 KYLGPFSEQTPSYLTGEFPGDYGWDTA-GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPN 122          
The following BLAST results are available for this feature:
BLAST of EY703481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB23_POLMU8.830e-2144.94Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_LEMGI3.355e-2042.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI3.355e-2042.50Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_PINTH4.382e-2041.88Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_PEA4.382e-2052.00Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB24_SOLLC5.723e-2042.11Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB48_MAIZE9.762e-2042.47Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB215_PEA9.762e-2053.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP2.175e-1943.31Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC3.710e-1953.13Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-020-C02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703481 ID=EY703481; Name=EY703481; organism=Citrus sinensis; type=EST; length=813bp
CCACGCGTCCGCTTCTAACACTATAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCAACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCACGCAATGAGCTGAGCAATGGTGGCGCATTCT
CCTTGCGTAAAACCGGGACATGTTTTTTTTTCTTAAGGTACCCGGTGGTC
CCGCCCGGAAAGATTAAATTTCTTGGGTCCATTCTCTGGCGACCCCCCAA
GCTACTTGACTGGTGAGTTCCCTGGTGACTACCGTTCGGGACACTGCTGG
GCCTTTCACCTGACCCAGAAACCTTTGCCAGGAACCGTGAACTCAAATTC
TTCCCTGCAAAATGGGCCATGTTGGGAGCTCTTGGATGCGTTTTTCCGGA
ACTTCTGGCCCAAAACGGGGTAAAATTTGGTAAGGGCCGTTGGTTAAAGG
TGGGGCCCAAAATTTTAACGAGGGGGGGCTTAATCCTTGGGAAACCAAAC
TGGTGCCCCCCAAAGAATTTTGGGCATTTTGGCTTTCTCGGGGTTTTTGG
GGGAACACCTTGGGGTAAAAAATATTTTTAGGGCCCCCCTGGAAAAAAAT
CCCCCCATTTTCCCCCCGGGGGAAACTTTATACTTTTGTTTTTGTAATAA
CACACGGGCTTTTTNCTCGCCCACGAGGGTGGGAAAAAAAAAAATGGGGG
GGGGTGTTTCCTCCCTCCTCGTGGGGAATGAACCCGACTTTTTCCCCCCG
GGAGAGACGTTCTTAATAAATACTGCCCTCCTTATGGAGACATCTTATAA
AAAATAGGCGGGG
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