EY703477

Overview
NameEY703477
Unique NameEY703477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 3
Query:  336 LDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            + +  +   P   YS    +K    A EC  CL +F + ET+R++PKC+H FH +CID WL SH++C  CR ++
Sbjct:   89 IKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 44/147 (29.93%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  129 SPEPPGSV-DPYSNMEFNPSLAIIIVGSIAALLFMGFLSIYIRHCS--DSSNSVIXXXXXXXXXXXXXXXXXLDREVIDTFPTLVY-SEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCRSNM 557
            +P+P G + D Y +      LA ++   I AL     L   +R      S + V                  L ++ +   P  +Y S +  +K    A EC  CL +FED E +R++PKC+H FH  CID WL S ++C  CR ++
Sbjct:   17 NPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGIIDMK----ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159          
BLAST of EY703477 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  336 LDREVIDTFPTLVYSEVKTLKVGKGALECADCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCAVCR 548
            + ++ +  FP + YS    L  G G  EC  CL++F   E LRL+PKC+H FH  CID WL+ H TC  CR
Sbjct:  109 IKKKALRMFPVVSYSREMNLP-GIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 177          
The following BLAST results are available for this feature:
BLAST of EY703477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ATL5B_ARATH9.898e-1139.19RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL3C_ARATH9.898e-1129.93RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
ATL1J_ARATH9.898e-1145.07RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-020-B04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703477 ID=EY703477; Name=EY703477; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGAATAATGGGGTCACGACTCTCACCCTACTGCGCGTAAC
ATGGGACCAGTCCCCTTTCTCTCGCAGCTCCTCATGCTCCTCGTGGCCCA
CGCGCTCCCCCTCTCGCTGGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCG
TGGACCCCTACTCCAACATGGAATTCAACCCCTCACTCGCCATAATAATC
GTCGGGTCGATTGCGGCTCTGTTGTTCATGGGCTTCTTGTCCATCTACAT
TCGCCACTGCTCCGACTCCAGCAACTCCGTCATCCGCCCCGCCGGCGCCG
GAGGCAACCGCTCCAGGCGCGGCGCCGCCCGCGGCCTCGACCGCGAGGTC
ATCGACACTTTCCCGACCTTGGTGTACTCGGAGGTCAAGACGCTGAAGGT
CGGCAAAGGCGCGCTCGAGTGCGCCGACTGCCTGAACGAGTTCGAGGATG
ACGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTCTTCCACCCCGAG
TGCATCGACGCCTGGCTTGAATCGCACACCACGTGTGCTGTTTGCCGCTC
GAATATGGCCTCTGAACCCGGTGAGACAACTCCTGAACCCAGTGAGCTGG
GCTCATCCGAGGTGGATCTCGCAGCCCAAAACGACCCCNCGGTAGCAGCA
GATACTTCACAAGAGACACAACCACAGCCACGAGGCTCACAACCAGCCGG
AACCTCAGGTATGAGCGTCAACTTTGGCTATCAAACGCTCAATAAGAACC
GTCCACGCGGCTCGGGGATCCGGGGAGCCACAAAAATTGGCCGCGGGCTA
CTCAACGGGGCATTCCTTGTTGCAACCAGGTGAGACACCGACCGGGTACC
TTGAAACTCCCGGTGGATGGGAGGAACATAAAGGAACCGGGAGCTGAACC
GGTCCATA
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