EY703463

Overview
NameEY703463
Unique NameEY703463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  161 TKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            + +   G  K+T+RK  + A  + VS S+    PNR  +   F G +P+ +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   23 SSSEITGNGKVTMRKTASKA--KPVSSSSPWYGPNRVKYLGPFSGESPS-YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.935e-13
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  155 GATKASFLGGKKLTLRKNGATAGT-RSVSVSAAAADPNRPLW---FPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            G T +  +G  ++T+RK   TAG  ++V  S+    P+R  +   F G +P+ +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   21 GPTASEIIGEGRITMRK---TAGKPKTVQSSSPWYGPDRVKYLGPFSGESPS-YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  161 TKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            + +   G  K+T+RK  + A T  VS  +    P+R  +   F G +P+ +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   23 SSSEITGNGKVTMRKTASKAKT--VSSGSPWYGPDRVKYLGPFSGESPS-YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 44/109 (40.37%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  140 STSVAGAT---KASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            ST+ AG      +S  G  ++T+RK  A A   + S S     P+R L+       P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   10 STAFAGKAVNVPSSSFGEARVTMRKTAAKAKPAAASGSPWYG-PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.540e-13
Identity = 42/101 (41.58%), Postives = 52/101 (51.49%), Query Frame = 2
Query:  146 SVAGATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPE 448
            S   +TK+ F     + +   GAT      S+SA         W PG     +LDGS PGDFGFD LGLG  P  L    +SE++HCRWAML    I +PE
Sbjct:   17 SFLSSTKSKFAAAMPVYV---GATNFMSRFSMSAD--------WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPE 106          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  146 SVAGATKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLWFP--GSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            +V     ++ +G  ++ +RK  A A  + VS S+     +R L+       P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   17 AVKNLPSSALIGDARVNMRKTAAKA--KQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  179 GGKKLTLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            G  K+T+RK  + A  + VS  +    P+R  +   F G +P+ +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   28 GNGKVTMRKTASKA--KPVSSGSPWYGPDRVKYLGPFSGESPS-YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 2
Query:  275 WFPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPE 448
            WFPG      LDGS PGDFGFDPLGL + PE      +SEI HCRWAML    + +PE
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPE 105          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.238e-12
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  179 GGKKLTLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            G  K+T+RK    A  + VS  +    P+R  +   F G +P+ +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   28 GNGKVTMRKTANKA--KPVSSGSPWYGPDRVKYLGPFSGESPS-YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
BLAST of EY703463 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.238e-12
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  161 TKASFLGGKKLTLRKNGATAGTRSVSVSAAAADPNRPLW---FPGSTPTEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAARIFIPEL 451
            + +   G  K T+RK    A  + VS  +    P+R  +   F G  P+ +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA     PEL
Sbjct:   23 SSSEITGNGKATMRKTATKA--KPVSSGSPWYGPDRVKYLGPFSGEAPS-YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
The following BLAST results are available for this feature:
BLAST of EY703463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CB23_NICPL1.317e-1342.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2A_SPIOL2.935e-1341.75Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_TOBAC8.540e-1341.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_MAIZE8.540e-1340.37Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC8.540e-1341.58Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_WHEAT1.902e-1237.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_TOBAC1.902e-1242.55Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB121_HORVU1.902e-1256.90Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB25_NICPL4.238e-1242.55Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PETSP4.238e-1240.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-019-H05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703463 ID=EY703463; Name=EY703463; organism=Citrus sinensis; type=EST; length=944bp
CCACGCGTCCGGTATTCTACTTTACACGCACACAAACGCCAGTCATAATT
TTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTGCTTCC
CCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTACATCAGT
TGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGACATTGA
GAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTGCGGCT
GCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCTACTGA
ATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTC
TTGGATCTGATCCTGAGACGCTTAGATGGAACGTGCAATCAGAAATTGTG
CACTGCAGATGGGCAATGTTAGGAGCTGCACGAATTTTCATTCCGGAATT
GGAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGCTGGGGA
GCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGATGATAT
TCATAGGCTGGGCAGAGGGCANACGGTGGGCCGACATTATAAAGCCAGGC
TGTGTGAACACTGACCCGATCTTTCCCACAACAAGCTCACCGGCACCGAT
TTGGGGTACCCCAGTGGGCTTTGGTTTGACCCACTTGCTGGGGATCCGGT
TCCCCCGAAAGGTAAAGGANCTGNNGACTAGGAAATCAANAATGGAAATT
GGCTTTTTGGCCTGAATGGTGGCTGGTTCACCCATTTACACCGCCCCCGC
CCATTGACATCTATTGCTCCCTGGCTAACCTGAACTGCCCCGTTTTGCTG
CCTCCCCCCAGTGGATATTACAACAAGGGGGAAATTTTGGCCATGGACCT
GAAACAAGGAATGGGTTTTCTAGGAAAGTGGTAATTAAATTTTT
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