EY703441

Overview
NameEY703441
Unique NameEY703441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 56/133 (42.11%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  123 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            K+F++RG+  + L +MS ++L +LF+AR RR   RG+      LI++++ AK     G+   P++TH+R++II+P M+   + V++GK F  V I+ EMIGHYL E+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:    3 KEFAYRGIPKEELDNMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 61/139 (43.88%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            PK++   +++FRG  +  L +MS ++ A+L  A+ RR  +RG       ++++ R  K         E VRTH RNMII PEMIG  + VYNGK F ++EI PEMIGH   E+S +   V HG  G+GAT SS+F+PLK
Sbjct:   10 PKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+  K   L+ K++KA+R    G++   +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 51/139 (36.69%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+  K   L+ K++KA+R    G+    +RTH R+ +I PEMIG   G+YNGK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 52/139 (37.41%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            P++R   +F ++G  L+ L +M   +  ++  +R RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG   G+YNGK F  V +  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 51/139 (36.69%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            P++R   +F ++G  L  L +M   +  ++  AR RR   RG+      L+ K++KA+R    G++P  +RTH R+ +I PEMIG  I +Y GK F ++++  E +G +L E + +   V+HG PG+GAT  S F+P+K
Sbjct:   24 PRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  114 RTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            R  ++F++ G  +D L  MS ++L  +  +RARR+  RG       L+  +R              +RTH R+MII+PEMIG  I +YNGK F +VE++PE + HYL EF+++ + V HG  GIGAT SS+F+PLK
Sbjct:   11 RRKEEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 56/139 (40.29%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            PK++   ++++RG  +  L ++S +E A+L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I V+NGK F  VE++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   10 PKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.950e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            PK++   ++++RG  +  L ++S +E A+L  +R RR  +RG       ++ + ++ K+          +RTH R+MII+PEMIG  I ++NGK F  V+++PEM+GH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   10 PKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of EY703441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_NITMS9.796e-2642.1130S ribosomal protein S19P OS=Nitrosopumilus marit... [more]
RS19_METBU4.862e-2543.8830S ribosomal protein S19P OS=Methanococcoides bur... [more]
RS19_METM72.413e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM55.375e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METMP9.169e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM69.169e-2437.4130S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS3.484e-2336.6930S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METHJ5.943e-2341.9130S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_METMA1.014e-2240.2930S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METAC2.950e-2238.1330S ribosomal protein S19P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-019-F03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703441 ID=EY703441; Name=EY703441; organism=Citrus sinensis; type=EST; length=725bp
CCACGCGTCCGCGCGTATTAGGTGTTTGATTCTCCTTATCACTCTAGTCT
CTAGCCATGGCGGATGTGGAAACCGGGGTTGCTGCTGGTGCTGCTGCAGG
ACAGCCAAAGAAGAGGACATTCAAGAAGTTTAGCTTCAGAGGTGTTGATT
TGGACGCTCTTTTGGACATGTCCACTGATGAGCTCGCCAAGCTATTTAGC
GCCCGTGCTCGCAGAAGGTTTCAGAGGGGGTTGAAAAGGAAGCCTATGGC
GTTGATCAAGAAGTTGCGCAAGGCGAAAAGGGAAGCTCCACCCGGCGAGA
AGCCTGAACCAGTTAGGACTCATCTTCGCAACATGATCATTGTGCCTGAA
ATGATCGGTAGTATAATTGGTGTTTACAATGGCAAGACCTTTAATCAAGT
TGAAATTAAGCCCGAAATGATTGGACATTACCTAGCCGAGTTCTCGATCT
CATACAAGCCAGTTAAGCACGGAAGACCTGGTATTGGTGCTACCCACTCT
TCTAGGTTCATTCCTCTGAAGTGAAGATTTTGCATGCTGTCCTTATGGAG
GGTATGTTTTGTCCTCCAAAAATGATTTTGGACCTGCCTGTTTTTGTCTT
TTCAGTTTTAATTAAAGCTTTTGAAAGAGTGTGATGCAAAATAGTTTTGA
AGGATATTCTGCTCAAGAGTATGCTTATTTTGGGAAATAAATATACCTGC
CTTACCCTGGAAAAAAAAAAAAAAA
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