EY703441

Overview
NameEY703441
Unique NameEY703441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METBF (30S ribosomal protein S19P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps19p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.852e-22
Identity = 54/139 (38.85%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            PK++   ++++RG  +  L ++S +E A+L  +R RR  +RG       ++ + ++ K+          VRTH R++II+PEMIG  I ++NGK F  V+++PEMIGH   EF+ +   V HG  G+GAT SS+F+PLK
Sbjct:   10 PKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------VRTHHRDLIILPEMIGQTIEIHNGKGFVSVDLQPEMIGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_UNCMA (30S ribosomal protein S19P OS=Uncultured methanogenic archaeon RC-I GN=rps19p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 50/139 (35.97%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            PK++  ++F++RG+ +  +  +  +++A L  AR RR+ +R    +   L+  ++  + +         ++THLR+MII+PEM+G    ++NGK +  VE  PEM+GHYL EF+++   V HG  GIGAT  S+++PLK
Sbjct:   13 PKRK--EEFTYRGLTIAEMKKLDMNQVAALLPARQRRKIKREFGEEHQKLLNAVKAGETK---------IKTHLRDMIILPEMVGVTFEIHNGKEWKAVETTPEMVGHYLGEFALTRHSVSHGSAGIGATRGSKYVPLK 140          
BLAST of EY703441 vs. ExPASy Swiss-Prot
Match: RS19_METLZ (30S ribosomal protein S19P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps19p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 55/139 (39.57%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  105 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 521
            PK+R  +++++ G +++ L  MS DEL  +  + ARR+  RG  R    +  K+ +           + VRTH R+MII+PEM+G  + +Y+GK F  VEI  E + HY  EF+++ K V HG  GIGAT SS+++PLK
Sbjct:   10 PKRR--EEYTYHGYNIEQLKAMSMDELLAIMPSGARRKVLRGFTRDEEDVRAKIAEG----------DGVRTHSRSMIILPEMVGKNVAIYSGKEFINVEIPVEGVFHYFGEFALTRKKVTHGSAGIGATKSSKYVPLK 136          
The following BLAST results are available for this feature:
BLAST of EY703441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METBF3.852e-2238.8530S ribosomal protein S19P OS=Methanosarcina barke... [more]
RS19_UNCMA6.571e-2235.9730S ribosomal protein S19P OS=Uncultured methanoge... [more]
RS19_METLZ1.912e-2139.5730S ribosomal protein S19P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-019-F03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703441 ID=EY703441; Name=EY703441; organism=Citrus sinensis; type=EST; length=725bp
CCACGCGTCCGCGCGTATTAGGTGTTTGATTCTCCTTATCACTCTAGTCT
CTAGCCATGGCGGATGTGGAAACCGGGGTTGCTGCTGGTGCTGCTGCAGG
ACAGCCAAAGAAGAGGACATTCAAGAAGTTTAGCTTCAGAGGTGTTGATT
TGGACGCTCTTTTGGACATGTCCACTGATGAGCTCGCCAAGCTATTTAGC
GCCCGTGCTCGCAGAAGGTTTCAGAGGGGGTTGAAAAGGAAGCCTATGGC
GTTGATCAAGAAGTTGCGCAAGGCGAAAAGGGAAGCTCCACCCGGCGAGA
AGCCTGAACCAGTTAGGACTCATCTTCGCAACATGATCATTGTGCCTGAA
ATGATCGGTAGTATAATTGGTGTTTACAATGGCAAGACCTTTAATCAAGT
TGAAATTAAGCCCGAAATGATTGGACATTACCTAGCCGAGTTCTCGATCT
CATACAAGCCAGTTAAGCACGGAAGACCTGGTATTGGTGCTACCCACTCT
TCTAGGTTCATTCCTCTGAAGTGAAGATTTTGCATGCTGTCCTTATGGAG
GGTATGTTTTGTCCTCCAAAAATGATTTTGGACCTGCCTGTTTTTGTCTT
TTCAGTTTTAATTAAAGCTTTTGAAAGAGTGTGATGCAAAATAGTTTTGA
AGGATATTCTGCTCAAGAGTATGCTTATTTTGGGAAATAAATATACCTGC
CTTACCCTGGAAAAAAAAAAAAAAA
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