EY703408

Overview
NameEY703408
Unique NameEY703408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.325e-33
Identity = 74/173 (42.77%), Postives = 104/173 (60.12%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRIGCC 582
            STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYD T   +F NV +WL E+  + + ++  +LIGNK D+     VSTE G+A A++  + F+ETSA D+ NVE AF  +  +I K +  +   A       T+  KG+ I   +        GCC
Sbjct:   39 STIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQ-TNANKTSGPGTVQMKGQPIQQNNG-------GCC 203          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.260e-33
Identity = 77/175 (44.00%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  R++ +D K +K QIWDTAGQER R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K+   GCC
Sbjct:   39 STIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKQAGGGCC 201          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.079e-32
Identity = 66/155 (42.58%), Postives = 100/155 (64.52%), Query Frame = 1
Query:   37 KNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 501
            ++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  +TNVE AF  +   I   ++++  ++ S+G
Sbjct:   30 EDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.079e-32
Identity = 66/155 (42.58%), Postives = 100/155 (64.52%), Query Frame = 1
Query:   37 KNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 501
            ++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  +TNVE AF  +   I   ++++  ++ S+G
Sbjct:   30 EDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.079e-32
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K +   A   G+           E  NVK  S+ +K+   GCC
Sbjct:   42 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA-----------EKSNVKIQSTPVKQSGGGCC 205          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 77/175 (44.00%), Postives = 103/175 (58.86%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A   GS           E  NV   S+ +K    GCC
Sbjct:   39 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGS-----------EKSNVNIQSTPVKSSGGGCC 202          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 77/175 (44.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  +++ +D K +K QIWDTAGQER+  ITS+YYRGA G L+VYDVT   ++ NV +WL+E+  H   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:   39 STIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAA------------SGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K +   A   G+           E  NVK  S+ +K+   GCC
Sbjct:   42 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA-----------EKSNVKIQSTPVKQSGGGCC 205          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K +   A   G+           E  NVK  S+ +K+   GCC
Sbjct:   42 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA-----------EKSNVKIQSTPVKQSGGGCC 205          
BLAST of EY703408 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 1
Query:   64 STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFXNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLXSKGETINVKDDSSVLKRI--GCC 582
            STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA +ATNVE +F  +  +I K +   A   G+           E  NVK  S+ +K+   GCC
Sbjct:   42 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA-----------EKSNVKIQSTPVKQSGGGCC 205          
The following BLAST results are available for this feature:
BLAST of EY703408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 498
Match NameE-valueIdentityDescription
RABD1_ARATH6.325e-3342.77Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1B_PIG8.260e-3344.00Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB8B_RAT1.079e-3242.58Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE1.079e-3242.58Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB1A_PIG1.079e-3243.43Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1_DISOM1.409e-3244.00Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1C_HUMAN1.409e-3244.00Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_RAT1.409e-3243.43Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.409e-3243.43Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.409e-3243.43Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-019-C02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703408 ID=EY703408; Name=EY703408; organism=Citrus sinensis; type=EST; length=851bp
CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCAAAAACGAGTTTAA
TTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGA
GGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAA
GAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGC
TTTGCTTGTATACGATGTAACACGACATGCTACATTTCANAATGTTGGAA
GGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATG
CTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGA
GGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTT
CCGCATTGGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACT
CAGATATACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGG
AACTGCTTCCACACTTNCATCTAAAGGAGAGACGATAAATGTCAAAGACG
ATTCATCCGTTCTAAAGAGAATTGGATGCTGCTCAAACTANGGAGATATA
TTCGGTTACCAGATTTTACAGCATTGGGCATTTTACTTGTACATGATCAA
AGTAATCTTTGTGTAAAATGAAAACTACCGTCTGGNTAACTGTTTTGAAT
TTTTCTAAAAGCCTCTCTCAAAGACTCTAAATTGTCTGGTATAAACCAAC
ATTTGGGTATTCCATTTGATTACCTGAAACTATGTTTTGATTNCTCATCC
TGACAGATATGGCCTGTAAAAAAAAAAAAGAAGGCCGCCGTCTAAAGATC
C
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