EY703296

Overview
NameEY703296
Unique NameEY703296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703296 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13
Identity = 55/136 (40.44%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  263 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAXAQIFSEGGLDYLGNPSLIHAQSILAIXACXVVLMGAVEGYRIAGGPL---XEVTDPLYPGGSFDPI 661
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A  VV    +E +R  GG L    E  D  YPG  FDP+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPL 488          

HSP 2 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  254 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 469
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+A
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEA 257          
BLAST of EY703296 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.156e-12
Identity = 53/122 (43.44%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  518 SLIHAQSILAIXACXVVLMGAVEGYR---IAGGPLXEVTDPLYPGGSFDPIGFG**PRSFC*AQG*GIKNGRXGYVFMFWFLXSGHCHPAGDR*RTXPDHLADPVNNNAL-GLXTHFCPRKV 871
            +LIHA+S+LAI A  V+LMGAVEGYR    A G   E  D LYPGG FDP+G    P +F   +   IKNGR     M  F         G        HL DP  +N L  L T F P  V
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPV-ENWLYHLQDPSAHNGLTALVTQFAPTPV 124          
The following BLAST results are available for this feature:
BLAST of EY703296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
LH18_EUGGR6.472e-1340.44Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_EUGGR7.156e-1243.44Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-018-A04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703296 ID=EY703296; Name=EY703296; organism=Citrus sinensis; type=EST; length=937bp
CCACGCGTCCGCTTCTCTTGCTTACACAGCTTCTGTTGCTTACACAGCTT
CTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACCATGGCTCTCTCC
TCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCT
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCA
TTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTA
CGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCCGTGTGGTTCAAGGCGGNGGCCCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATC
TNGGCTTGCCANGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGC
TGGAGGGCCGCTCGNTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCT
TTGATCCCATTGGGTTTGGCTGATGACCCCGGAGCTTTTGCTGAGCTCAA
GGNTAAGGAATCAAGAATGGAAGGTNGGGCTATGTCTTCATGTTTTGGTT
TCTTNCGTCAGGCCATTGTCACCCGGCAGGGGACCGTTAAAGAACTTGNC
CCGACCACTTGGCTGACCCTGTCAATAACAATGCCCTGGGCCTANCCACC
CACTTTTGTCCCCGGAAAGTGACCTTCGGTTGAATAAAAGTTTTCCTTTT
TCCGTTTTTGGGATATAAGAAAATCTTTGGGACCTCA
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