EY703231

Overview
NameEY703231
Unique NameEY703231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: RBM22_RAT (Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.762e-55
Identity = 127/303 (41.91%), Postives = 167/303 (55.12%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARA--GIHYESSYGKARP-SDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD----------------------EVRQQAAIAHSGMLPRS------LISXXXXXXXXXXXXXXXXXXXYFHIPPPPQQDRA----YYPIMDPQRMGA 821
            SDVN+EY+ +  +R      G       GKA   SD +LKL RT PYYKRNR H+CSF+V+GEC RG ECPYRHE P   +  L+ QNIKDRYYG+NDPVA KLL +A  MP L+PPED++I TLYVGG+   ITE DLR++FY  GEI ++ +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R + +  D                         ++ A A+   LP S       I+                   +  + PPP   RA    +YP  DPQRMGA
Sbjct:  110 SDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHLFHPMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: RBM22_XENLA (Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.925e-55
Identity = 122/300 (40.67%), Postives = 161/300 (53.67%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARA--GIHYESSYGKARPS-DTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR-----PEGESSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXYFHIPPPP------------------------QQDRAYYPIMDPQRMGA 821
            SDVN+EY+ +  +R      G     + GKA  S D +LKL RT PYYKRNR H+CSF+V+GEC RG ECPYRHE P   +  L+ QNIKDR+YG+NDPVA KLL +A  MP L+PPED+SI TLYVGG+   I+E +LR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R      +G     ++ +      G LP                           +PPPP                             +YP  DPQRMGA
Sbjct:  110 SDVNKEYYTQNMEREIANSDGTRPVGALGKATSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGINDPVADKLLKRASTMPRLDPPEDKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKSFNKLIVNGRRLNVKWGRSQAARGKEREHDGSGDPGMKFEPVPGLPGALPPPPTEEESSANYFNLPPNGSAALVNISLPPPPGLSGPPPGFGPHMFPPMAPPPFLRAPGHIHYPSQDPQRMGA 409          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: RBM22_BOVIN (Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.925e-55
Identity = 127/303 (41.91%), Postives = 166/303 (54.79%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARA--GIHYESSYGKARP-SDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGESSD----------------------EVRQQAAIAHSGMLPRS------LISXXXXXXXXXXXXXXXXXXXYFHIPPPPQQDRA----YYPIMDPQRMGA 821
            SDVN+EY+ +  +R      G       GKA   SD +LKL RT PYYKRNR H+CSF+V+GEC RG ECPYRHE P   +  L+ QNIKDRYYG+NDPVA KLL +A  MP L+PPED++I TLYVGG+   ITE DLR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NK ++ G RL + WG+ Q  R + +  D                         ++ A A+   LP S       I+                   +  + PPP   RA    +YP  DPQRMGA
Sbjct:  110 SDVNKEYYTQNMEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKFIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: RBM22_CHICK (Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.126e-55
Identity = 125/303 (41.25%), Postives = 166/303 (54.79%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARA--GIHYESSYGKARP-SDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQR-----PEGESSDEVRQQAAIAHSGMLPRS-----------------------LISXXXXXXXXXXXXXXXXXXXYFHIPPPPQQDRA----YYPIMDPQRMGA 821
            SDVN+EY+ +  +R      G     + GKA   SD +LKL RT PYYKRNR H+CSF+V+GEC RG ECPYRHE P   +  L+ Q+IKDRYYG+NDPVA KLL +A  MP L+PP+D++I TLYVGG+   ITE DLR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL++ G RL + WG+ Q  R      EG +   ++ +      G LP                          I+                   +  + PPP   RA    +YP  DPQRMGA
Sbjct:  110 SDVNKEYYTQNMEREIANSDGTRPVGALGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQDIKDRYYGINDPVADKLLKRASTMPRLDPPDDKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKDKEGTTESGIKLEPVPGLPGALPPPPAAEEEASANYFNLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHAMGPPPPFMRAPGPIHYPSQDPQRMGA 412          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: RBM22_DANRE (Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.544e-54
Identity = 123/308 (39.94%), Postives = 164/308 (53.25%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARA--GIHYESSYGKA-RPSDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGE--LSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGKPQTQRPEGE----SSDEVRQQAAIAHSGMLPRSLISXXXXXXXXXXXXXXXXXXXY-FHIPPPP--------------------------------QQDRAYYPIMDPQRMGA 821
            SDVN+EY+ +  +R      G       GKA   SD +LKL RT PYYKRNR H+CSF+V+GEC RG ECPYRHE P   +  L+ QNIKDRYYG+NDPVA KLL +A  MP L+ P+D+SI TLY+GG+   +T+ +LR++FY  GEI +I +  ++  AF+ + TR+ AE AAE+  NKL+I G RL + WG+ Q  R +GE    +   +R +      G LP   +S                       +PPPP                                   + +YP  DPQRMGA
Sbjct:  110 SDVNKEYYTQNMEREIANSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLMRASTMPRLDVPDDKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKSFNKLIINGRRLNVKWGRSQAARGKGEKDGVTESGIRLEPVPGLPGALPPPPVSDEDASTNYFNLAPTPSPAVMNLGLPPPPGVTMPPPPGFGPPMFHTMDPMAPPVPPPMALRPPGQVHYPSQDPQRMGA 417          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: SLT11_CRYNE (Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans GN=SLT11 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.025e-35
Identity = 85/225 (37.78%), Postives = 132/225 (58.67%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARA---GIHYESSYGKARPSDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPVTGEL---SQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDN------FYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNK--LVIKGLRLKLMWGKPQTQRPEGESSDEVRQQAAIA 656
            SD+N++Y+ +  + +      G+ Y+S        + +  L RT PYYKRNR H+CSF+V+GEC RGAECP+RHEMP   E    SQQ++ DRYYG NDPVA K+L++  E   L+ PED+SI TL   G+  +  +  +R +      F    +++SI +      AFV +  R  AE+AA+ L+ +  + ++G + K++WG+    RP+ +++  V   AA A
Sbjct:  106 SDINKQYYIQNLEAQMAESPDGLAYDSEVANRAGREMLKNLARTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRNDPVAKKILSQNAESKGLKAPEDKSITTLLFLGL-PQCNDSHVRASLVGACPFVKPSDVKSISIVEASHCAFVNFNQRSMAERAADALAAQGGIEVEGKKAKIVWGR---ARPQKKAAAAVEGSAAPA 326          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: RBM22_PLAF7 (Pre-mRNA-splicing factor PFL2310w OS=Plasmodium falciparum (isolate 3D7) GN=PFL2310w PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.112e-24
Identity = 63/187 (33.69%), Postives = 111/187 (59.36%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARAGIHYESSYGKA-RPSDTILKLQRTQPYYKRNRAHVCSFYVRGECTRGAECPYRH-EMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKT-LYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRL 575
            ++ NR +F E+ +          S+Y K  R +  + KL+R  PY+KRN A VCSF+ +  C RG ECPY H E+ +   LS QNIK+RY G ND +A K+L K  E  +    +D+++   + + G+   +++ ++++ F   G+I+SIK+ P+ +  F++Y+  + A+KA+++  + L++ G  L
Sbjct:  112 NETNRNFFLEQMEN------DMSSTYDKMNRINMDLSKLKRRDPYFKRNMARVCSFWRKNSCNRGDECPYLHKEIHLDKSLSNQNIKNRYTGENDILAEKILLKHNEKNN----DDKNMSNKICIQGISESVSQANIKECFKKFGDIKSIKVIPKDSKMFISYSNSQAAKKASDKYKDGLLLNGCNL 288          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: SLT11_USTMA (Pre-mRNA-splicing factor SLT11 OS=Ustilago maydis GN=SLT11 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.328e-15
Identity = 59/220 (26.82%), Postives = 99/220 (45.00%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARAGIHYESSYGKARPSDTILKLQRTQPYYKRNRA----HVCSFYVRGECTRGAECPYRHEMPVTGEL----SQQNIKDRYYGVND----PVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAH-------GEIESIKMHPQKAFAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG--KPQTQRPEGE 620
            SD  + YFA+  +++  A +   S  G+    + + K  R +  YKR+R      +CS + RG C RG  CP++H++P   +L       NI   Y   +         K+L  +     L PP D S+++L++  +     E+     F+          +I+SI +      AFV + TR+ AE AA     K+ +    ++LMWG  +P  +  E E
Sbjct:  102 SDKAKAYFADTMEKQLEATVGSSSRAGQ----ELVRKAARREIDYKRDRPVQSQKLCSAFARGRCERGDSCPFKHQLPTDDQLPGLQPSSNINYPYSPTSSSPSKQAVAKILTSSTSSVGLPPPSDASVRSLFISNLPPEHLEEPSIRQFFLDLAPPLQAQDIKSITLVRASNCAFVNFATRDHAELAARRCEPKMRLGDKEIRLMWGRSRPVKRNEENE 317          
BLAST of EY703231 vs. ExPASy Swiss-Prot
Match: SLT11_SCHPO (Pre-mRNA-splicing factor slt11 OS=Schizosaccharomyces pombe GN=cwf5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.340e-13
Identity = 59/205 (28.78%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   24 SDVNREYFAEEHDRRARAG-IHYESSYGKARPSDTILKLQRTQPYY---KRNRAHVCSFYVRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGVDARITEQDLRDNFYAHGEIESIKMHPQKAFAFVTYTTREGAE-KAAEELSNKLVIKGLRLKLMWGKPQT-QRPEGE 620
            +D+NRE+FA+   R    G   Y+S    A   + + K+++ + +    KR    V S  +  E  R ++     E P+      + I      +N  V+L +        ++EPP+D+ I +L++ GV+  + +  +R +F  +G ++S+    +   AFV + TR  AE  AA      +VI+G RLK+ WGKP++   PEGE
Sbjct:  109 NDINREFFAQNQQRLLSNGETAYDSQEASAAARNLVKKVEKRELHSRPPKRKLDDVESKQILKEA-RASDASLNAERPL---FPVKKI------INGNVSLSI--------NMEPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVCSHRAKCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGE 295          
The following BLAST results are available for this feature:
BLAST of EY703231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RBM22_RAT1.762e-5541.91Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicu... [more]
RBM22_XENLA3.925e-5540.67Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis G... [more]
RBM22_BOVIN3.925e-5541.91Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RB... [more]
RBM22_CHICK5.126e-5541.25Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN... [more]
RBM22_DANRE2.544e-5439.94Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=r... [more]
SLT11_CRYNE2.025e-3537.78Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neo... [more]
RBM22_PLAF76.112e-2433.69Pre-mRNA-splicing factor PFL2310w OS=Plasmodium fa... [more]
SLT11_USTMA2.328e-1526.82Pre-mRNA-splicing factor SLT11 OS=Ustilago maydis ... [more]
SLT11_SCHPO6.340e-1328.78Pre-mRNA-splicing factor slt11 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-017-C10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY703231 ID=EY703231; Name=EY703231; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGTGCCATTCCATTAGCGATGTAAACAGGGAGTACTTTGCC
GAGGAACATGACCGCAGGGCTAGAGCTGGTATACACTATGAATCCTCATA
TGGGAAGGCTCGACCAAGTGACACTATCCTGAAGCTTCAGAGAACACAGC
CTTACTACAAAAGAAACAGAGCACATGTTTGCAGTTTCTATGTTCGTGGT
GAATGCACAAGAGGTGCTGAGTGTCCATATAGGCATGAGATGCCTGTAAC
TGGGGAGTTATCTCAGCAAAATATTAAAGATCGTTACTATGGGGTGAACG
ATCCTGTTGCGCTGAAGCTACTTAACAAGGCAGGTGAGATGCCCTCCCTG
GAACCTCCTGAGGATGAAAGCATTAAAACTCTTTATGTTGGTGGGGTTGA
TGCAAGAATCACTGAGCAAGATCTAAGGGATAACTTTTATGCCCATGGTG
AGATTGAATCCATAAAGATGCATCCACAAAAAGCATTTGCTTTTGTAACC
TACACAACAAGAGAAGGTGCAGAGAAGGCTGCAGAAGAGCTCTCTAACAA
ACTTGTCATAAAGGGTCTTAGGCTGAAGCTCATGTGGGGTAAGCCCCAGA
CACAAAGGCCTGAGGGTGAAAGCTCGGATGAAGTGAGACAACAGGCTGCG
ATTGCTCATAGTGGGATGTTGCCTCGTTCACTGATATCGCAGCAGCAGAA
TCAATATCAGCAACCTGGTGCTCAGGACCAAGCTGCACCCACCCCCTACT
TTCATATTCCTCCTCCACCTCAGCAGGATAGAGCCTATTATCCCATCATG
GATCCTCAAAGAATGGGAGCTCTTGTCCCNACCCAGAAGGGGAGAACAGT
CTGGTCCAGAGAGCAGCACNAGGACAGCATTATCCTATCGACCACCATGC
CCGCTCACATGGGCATATCCCAGCAGCT
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